Musah R A, Goodin D B
Department of Molecular Biology, MB8, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.
Biochemistry. 1997 Sep 30;36(39):11665-74. doi: 10.1021/bi9708038.
The binding and oxidation of an artificial substrate, 2-aminothiazole, by an engineered cavity of cytochrome c peroxidase is described. The W191G mutant has been shown to create a buried cavity into which a number of small heterocyclic compounds will bind [Fitzgerald, M. M., Churchill, M. J., McRee, D. E., & Goodin, D. B. (1994) Biochemistry 33, 3807-3818], providing a specific site near the heme from which substrates might be oxidized. In this study, we show by titration calorimetry that 2-aminothiazole binds to W191G with a Kd of 0.028 mM at pH 6. A crystal structure at 2.3 A resolution of W191G in the presence of 2-aminothiazole reveals the occupation of this compound in the cavity, and indicates that it is in van der Waals contact with the heme. The WT enzyme reacts with H2O2 to form Compound ES, in which both the iron center and the Trp-191 side chain are reversibly oxidized. For the W191F (and perhaps the W191G) mutants, the iron is still oxidized, but the second equivalent exists transiently as a radical on the porphyrin before migrating to an alternate protein radical site [Erman, J. E., Vitello, L. B., Mauro, J. M., & Kraut, J. (1989) Biochemistry 28, 7992-7995]. Two separate reactions are observed between 2-aminothiazole and the oxidized centers of W191G. In the one reaction, optical and EPR spectra of the heme are used to show that 2-aminothiazole acts as an electron donor to the ferryl (Fe4+&dbd;O) center of W191G to reduce it to the ferric oxidation state. This reaction occurs from within the cavity, as it is not observed for variants that lack this artificial binding site. A second reaction between 2-aminothiazole and peroxide-oxidized W191G, which is much less efficient, results in the specific covalent modification of Tyr-236. Electrospray mass spectra of the W191G after incubation in 2-aminothiazole and H2O2 show a modification of the protein indicative of covalent binding of 2-aminothiazole. The site of modification was determined to be Tyr-236 by CNBr peptide mapping and automated peptide sequencing. The covalent modification is only observed for W191G and W191F which form the alternate radical center. This observation provides an unanticipated assignment of this free radical species to Tyr-236, which is consistent with previous proposals that it is a tyrosine. The oxidation of 2-aminothiazole by W191G represents an example of how the oxidative capacity inherent in the heme prosthetic group and the specific binding behavior of artificial protein cavities can be harnessed and redirected toward the oxidation of organic substrates.
本文描述了细胞色素c过氧化物酶的工程化腔对人工底物2-氨基噻唑的结合与氧化作用。W191G突变体已被证明能形成一个埋藏的腔,许多小的杂环化合物会结合到这个腔内[菲茨杰拉德,M.M.,丘吉尔,M.J.,麦克里,D.E.,&古丁,D.B.(1994)《生物化学》33,3807 - 3818],在血红素附近提供了一个可能氧化底物的特定位点。在本研究中,我们通过滴定热分析法表明,在pH 6时,2-氨基噻唑以0.028 mM的解离常数(Kd)与W191G结合。在存在2-氨基噻唑的情况下,分辨率为2.3 Å的W191G晶体结构揭示了该化合物在腔内的占据情况,并表明它与血红素存在范德华接触。野生型酶与过氧化氢反应形成化合物ES,其中铁中心和色氨酸-191侧链均被可逆氧化。对于W191F(可能还有W191G)突变体,铁仍然被氧化,但第二个等价物在迁移到另一个蛋白质自由基位点之前,短暂地以卟啉上的自由基形式存在[埃尔曼,J.E.,维泰洛,L.B.,毛罗,J.M.,&克劳特,J.(1989)《生物化学》28,7992 - 7995]。在2-氨基噻唑与W191G的氧化中心之间观察到两个独立的反应。在一个反应中,血红素的光学和电子顺磁共振光谱表明,2-氨基噻唑作为电子供体作用于W191G的高铁(Fe4+═O)中心,将其还原为三价铁氧化态。这个反应发生在腔内,因为对于缺乏这个人工结合位点的变体未观察到该反应。2-氨基噻唑与过氧化物氧化的W191G之间的第二个反应效率低得多,导致酪氨酸-236发生特异性共价修饰。在2-氨基噻唑和过氧化氢中孵育后的W191G的电喷雾质谱显示蛋白质发生了修饰,表明2-氨基噻唑存在共价结合。通过溴化氰肽图谱分析和自动肽测序确定修饰位点为酪氨酸-236。仅在形成交替自由基中心的W191G和W191F中观察到共价修饰。这一观察结果将这个自由基物种意外地归属于酪氨酸-236,这与之前认为它是酪氨酸的提议一致。W191G对2-氨基噻唑的氧化代表了一个例子,说明如何利用血红素辅基固有的氧化能力和人工蛋白质腔的特异性结合行为,并将其重新导向有机底物的氧化。