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Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution.古菌组蛋白对核小体定位序列的选择以及依赖组蛋白的基因组进化的原核起源
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本文引用的文献

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A study of the conditions and mechanism of the diphenylamine reaction for the colorimetric estimation of deoxyribonucleic acid.用于比色法测定脱氧核糖核酸的二苯胺反应的条件及机制研究。
Biochem J. 1956 Feb;62(2):315-23. doi: 10.1042/bj0620315.
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Methanogenesis: genes, genomes, and who's on first?甲烷生成:基因、基因组以及谁先发?
J Bacteriol. 1997 Oct;179(19):5975-86. doi: 10.1128/jb.179.19.5975-5986.1997.
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Archaeal histones, nucleosomes, and transcription initiation.古菌组蛋白、核小体与转录起始。
Cell. 1997 Jun 27;89(7):999-1002. doi: 10.1016/s0092-8674(00)80286-x.
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Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum deltaH.嗜热自养甲烷杆菌δH中氢气对生长、生长产量及甲烷基因转录的调控
J Bacteriol. 1997 Feb;179(3):889-98. doi: 10.1128/jb.179.3.889-898.1997.
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RNA polymerase II transcription initiation: a structural view.RNA聚合酶II转录起始:结构视角
Proc Natl Acad Sci U S A. 1997 Jan 7;94(1):15-22. doi: 10.1073/pnas.94.1.15.
6
Interaction of the histone (H3-H4)2 tetramer of the nucleosome with positively supercoiled DNA minicircles: Potential flipping of the protein from a left- to a right-handed superhelical form.核小体的组蛋白(H3-H4)2四聚体与正超螺旋DNA小环的相互作用:蛋白质从左手超螺旋形式向右手超螺旋形式潜在的翻转。
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Histones and chromatin structure in hyperthermophilic Archaea.嗜热古菌中的组蛋白与染色质结构
FEMS Microbiol Rev. 1996 May;18(2-3):203-13. doi: 10.1111/j.1574-6976.1996.tb00237.x.
8
NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone.嗜热古菌嗜热栖热甲烷菌(Methanothermus fervidus)的HMfB的核磁共振结构证实,这种古菌蛋白是一种组蛋白。
J Mol Biol. 1996 Jan 12;255(1):187-203. doi: 10.1006/jmbi.1996.0016.
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Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA.组蛋白八聚体表面的拓扑结构:核小体DNA对接中使用的重复结构基序。
Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10489-93. doi: 10.1073/pnas.90.22.10489.
10
Growth phase-dependent transcription of the genes that encode the two methyl coenzyme M reductase isoenzymes and N5-methyltetrahydromethanopterin:coenzyme M methyltransferase in Methanobacterium thermoautotrophicum delta H.嗜热自养甲烷杆菌δH中编码两种甲基辅酶M还原酶同工酶以及N5-甲基四氢甲蝶呤:辅酶M甲基转移酶的基因的生长阶段依赖性转录。
J Bacteriol. 1994 Oct;176(20):6384-91. doi: 10.1128/jb.176.20.6384-6391.1994.

古菌核小体。

Archaeal nucleosomes.

作者信息

Pereira S L, Grayling R A, Lurz R, Reeve J N

机构信息

Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA.

出版信息

Proc Natl Acad Sci U S A. 1997 Nov 11;94(23):12633-7. doi: 10.1073/pnas.94.23.12633.

DOI:10.1073/pnas.94.23.12633
PMID:9356501
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC25063/
Abstract

Archaea contain histones that have primary sequences in common with eukaryal nucleosome core histones and a three-dimensional structure that is essentially only the histone fold. Here we report the results of experiments that document that archaeal histones compact DNA in vivo into structures similar to the structure formed by the histone (H3+H4)2 tetramer at the center of the eukaryal nucleosome. After formaldehyde cross-linking in vivo, these archaeal nucleosomes have been isolated from Methanobacterium thermoautotrophicum and Methanothermus fervidus, visualized by electron microscopy on plasmid and genomic DNAs, and shown by immunogold labeling, SDS/PAGE, and immunoblotting to contain archaeal histones, cross-linked into tetramers. Archaeal nucleosomes protect approximately 60 bp of DNA and multiples of approximately 60 bp from micrococcal nuclease digestion, and immunoprecipitation has demonstrated that most, but not all, M. fervidus genomic DNA sequences are associated in vivo with archaeal histones.

摘要

古细菌含有组蛋白,其一级序列与真核生物核小体核心组蛋白有共同之处,且三维结构本质上仅是组蛋白折叠结构。在此,我们报告了一些实验结果,这些实验证明古细菌组蛋白在体内将DNA压缩成与真核生物核小体中心由组蛋白(H3 + H4)2四聚体形成的结构相似的结构。在体内进行甲醛交联后,已从嗜热自养甲烷杆菌和嗜热栖热菌中分离出这些古细菌核小体,通过电子显微镜观察质粒和基因组DNA上的它们,并通过免疫金标记、SDS/聚丙烯酰胺凝胶电泳和免疫印迹表明其含有交联成四聚体的古细菌组蛋白。古细菌核小体保护约60 bp的DNA以及约60 bp的倍数不被微球菌核酸酶消化,免疫沉淀已证明,嗜热栖热菌的大多数(但不是全部)基因组DNA序列在体内与古细菌组蛋白相关联。