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不同哺乳动物物种中ras基因第1和第2外显子内的高度序列相似性以及ras基因家族的系统发育分歧。

High sequence similarity within ras exons 1 and 2 in different mammalian species and phylogenetic divergence of the ras gene family.

作者信息

Watzinger F, Mayr B, Haring E, Lion T

机构信息

Children's Cancer Research Institute, St. Anna Kinderspital, Vienna, Austria.

出版信息

Mamm Genome. 1998 Mar;9(3):214-9. doi: 10.1007/s003359900728.

Abstract

We have determined the canine and feline N-, K-, and H-ras gene sequences from position +23 to +270 covering exons I and II which contain the mutational hot spot codons 12, 13, and 61. The results were used to assess the degree of similarity between ras gene DNA regions containing the critical domains affected in neoplastic disorders in different mammalian species. The comparative analyses performed included human, canine, feline, murine, rattine, and, whenever possible, bovine, leporine (rabbit), porcelline (guinea pig), and mesocricetine (hamster) ras gene sequences within the region of interest. Comparison of feline and canine nucleotide sequences with the corresponding regions in human DNA revealed a sequence similarity greater than 85% to the human sequence. Contemporaneous analysis of previously published ras DNA sequences from other mammalian species showed a similar degree of homology to human DNA. Most nucleotide differences observed represented synonymous changes without effect on the amino acid sequence of the respective proteins. For assessment of the phylogenetic evolution of ras gene family, a maximum parsimony dendrogram based on multiple sequence alignment of the common region of exons I and II in the N-, K-, and H-ras genes was constructed. Interestingly, a higher substitution rate among the H-ras genes became apparent, indicating accelerated sequence evolution within this particular clade. The most parsimonious tree clearly shows that the duplications giving rise to the three ras genes must have occurred before the mammalian radiation.

摘要

我们已确定犬类和猫科动物N-、K-和H-ras基因从+23位到+270位的序列,该序列涵盖包含突变热点密码子12、13和61的外显子I和II。这些结果用于评估不同哺乳动物物种中在肿瘤性疾病中受影响的包含关键结构域的ras基因DNA区域之间的相似程度。进行的比较分析包括人类、犬类、猫科动物、鼠类、大鼠类,并且只要有可能,还包括牛类、兔类(兔子)、豚鼠类(豚鼠)和仓鼠类(仓鼠)在所关注区域内的ras基因序列。猫科动物和犬类核苷酸序列与人类DNA相应区域的比较显示与人类序列的序列相似性大于85%。对先前发表的来自其他哺乳动物物种的ras DNA序列的同期分析显示与人类DNA有相似程度的同源性。观察到的大多数核苷酸差异代表同义变化,对各自蛋白质的氨基酸序列没有影响。为了评估ras基因家族的系统发育进化,基于N-、K-和H-ras基因中外显子I和II共同区域的多序列比对构建了最大简约树状图。有趣的是,H-ras基因之间较高的替换率变得明显,表明在这个特定分支内序列进化加速。最简约的树清楚地表明产生这三个ras基因的重复必定发生在哺乳动物辐射之前。

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