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一种用于分离DNA互补链的沉降速度法。

A sedimentation velocity method for the separation of complementary strands of DNA.

作者信息

Legerski R J, Gray H B

出版信息

Biochim Biophys Acta. 1976 Aug 18;442(2):129-41. doi: 10.1016/0005-2787(76)90483-4.

DOI:10.1016/0005-2787(76)90483-4
PMID:953005
Abstract

A method is described for the rapid separation of the complementary strands of homogeneous DNA's. The method takes advantage of a difference in sedimentation coefficients between the complementary strands when these have been dissociated and complexed with poly(U-G). The separation procedure is readily carried out for preparative purposes by zone sedimentation in linear 5--20% (w/v) sucrose gradients containing 2 M NaCl. In analytical band sedimentation experiments, concentrated solutions of CsCl have been used to effect the separation of the complexed complementary strands. Sedimentation coefficients corresponding to corrected values at infinite dilution for the cesium salt of the nucleic acid complexes at 25 degrees C (s 25, w) have been obtained for the complexed complementary strands of coliphage lambdab2b5c DNA and for the uncomplexed single strands of this DNA. The relative values of the parameters affecting s 25, w have been determined. Under these conditions, for which preferential hydration of the sedimenting species is not involved, it was found that the more highly complexed strand has sustained a 24% increase in mass and a 28% decrease in frictional coefficient relative to uncomplexed DNA, while the strand binding the lesser amount of RNA has increased in mass by 11% and changed in frictional coefficient by an insignificant amount relative to the uncomplexed species from that of the uncomplexed DNA do not contribute significantly to the differences in s 25, w between the complexed complementary strands.

摘要

本文描述了一种快速分离均一DNA互补链的方法。该方法利用了互补链与聚(U-G)解离并复合后沉降系数的差异。通过在含2M氯化钠的线性5%-20%(w/v)蔗糖梯度中进行区带沉降,可方便地进行制备性分离操作。在分析性区带沉降实验中,已使用浓氯化铯溶液来实现复合互补链的分离。已获得了25℃下噬菌体λb2b5c DNA复合互补链及该DNA未复合单链核酸复合物铯盐在无限稀释时校正值对应的沉降系数(s25,w)。已确定了影响s25,w的参数的相对值。在不涉及沉降物质优先水合作用的这些条件下,发现与未复合DNA相比,复合程度更高的链质量增加了24%,摩擦系数降低了28%,而结合较少RNA的链质量增加了11%,摩擦系数相对于未复合链变化不显著。未复合DNA的那些参数对复合互补链之间s25,w的差异贡献不大。

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1
A sedimentation velocity method for the separation of complementary strands of DNA.一种用于分离DNA互补链的沉降速度法。
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引用本文的文献

1
Extracellular nucleases of Alteromonas espejiana BAL 31.IV. The single strand-specific deoxyriboendonuclease activity as a probe for regions of altered secondary structure in negatively and positively supercoiled closed circular DNA.埃氏交替单胞菌BAL 31的细胞外核酸酶。IV. 单链特异性脱氧核糖核酸内切酶活性作为负超螺旋和正超螺旋闭环DNA二级结构改变区域的探针。
Nucleic Acids Res. 1979 Jan;6(1):331-57. doi: 10.1093/nar/6.1.331.
2
Extracellular nucleases of pseudomonas BAL 31. III. Use of the double-strand deoxyriboexonuclease activity as the basis of a convenient method for the mapping of fragments of DNA produced by cleavage with restriction enzymes.铜绿假单胞菌BAL 31的细胞外核酸酶。III. 以双链脱氧核糖核酸外切酶活性为基础,建立一种便捷的方法用于绘制由限制性内切酶切割产生的DNA片段图谱。
Nucleic Acids Res. 1978 May;5(5):1445-64. doi: 10.1093/nar/5.5.1445.