Elgavish S, Shaanan B
The Institute of Life Sciences, The Hebrew University of Jerusalem, Givat Ram, Israel.
J Mol Biol. 1998 Apr 10;277(4):917-32. doi: 10.1006/jmbi.1998.1664.
The structures of the Erythrina corallodendron lectin (EcorL) and of its complexes with galactose, N-acetylgalactosamine, lactose and N-acetyllactosamine were determined at a resolution of 1.9 to 1.95 A. The final R-values of the five models are in the range 0.169 to 0.181. The unusual, non-canonical, dimer interface of EcorL is made of beta-strands from the two monomers, which face one another in a "hand-shake" mode. The galactose molecule in the primary binding site is bound in an identical way in all four complexes. Features of the electrostatic potential of the galactose molecule match those of the potential in the combining site, thus probably pointing to the contribution of the electrostatic energy to determining the orientation of the ligand. No conformational change occurs in the protein upon binding the ligand. Subtle variations in the binding mode of the second monosaccharide (glucose in the complex with lactose and N-acetylglucosamine in the complex with N-acetyllactosamine) were observed. The mobility of Gln219 is lower in the complexes with the disaccharides than in the complexes with the monosaccharides, indicating further recruitment of this residue to ligand binding through more extensive hydrogen bonding in the former complexes. Water molecules that have been located in the combining sites of the five structures undergo rearrangement in response to binding of the different ligands. The new structural information is in qualitative agreement with thermodynamic data on the binding to EcorL.
刺桐凝集素(EcorL)及其与半乳糖、N-乙酰半乳糖胺、乳糖和N-乙酰乳糖胺复合物的结构在1.9至1.95埃的分辨率下得以确定。五个模型的最终R值在0.169至0.181范围内。EcorL不同寻常的、非典型的二聚体界面由来自两个单体的β链组成,它们以“握手”模式相互面对。在所有四种复合物中,主要结合位点的半乳糖分子以相同方式结合。半乳糖分子的静电势特征与结合位点的电势特征相匹配,因此可能表明静电能对确定配体取向有贡献。蛋白质在结合配体后未发生构象变化。观察到第二种单糖(与乳糖复合物中的葡萄糖以及与N-乙酰乳糖胺复合物中的N-乙酰葡糖胺)结合模式的细微变化。与二糖形成的复合物中Gln219的流动性低于与单糖形成的复合物,这表明在前者的复合物中,该残基通过更广泛的氢键作用进一步参与配体结合。在五个结构的结合位点中定位的水分子会因不同配体的结合而发生重排。新的结构信息与关于与EcorL结合的热力学数据在定性上一致。