Gibbs A C, Kondejewski L H, Gronwald W, Nip A M, Hodges R S, Sykes B D, Wishart D S
Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton, Canada.
Nat Struct Biol. 1998 Apr;5(4):284-8. doi: 10.1038/nsb0498-284.
Cyclic peptide homologs of gramicidin S containing 6, 8, 10, 12, 14 and 16 residues were synthesized and characterized using circular dichroism (CD) and 1H NMR spectroscopy. Based on the three-dimensional structures generated from these data we have found strong evidence of a periodic sequence-length dependence on beta-sheet content. In particular, peptides of length 6, 10 and 14 residues exhibit a high beta-sheet content, while peptides of 8, 12 and 16 residues appear to exist as random coils. This unusual beta-sheet periodicity may have important implications in our understanding of beta-sheet formation and in the design of constrained beta-sheet and beta-hairpin mimics.
合成了含有6、8、10、12、14和16个残基的短杆菌肽S的环肽类似物,并使用圆二色性(CD)和1H核磁共振光谱对其进行了表征。基于从这些数据生成的三维结构,我们发现了β-折叠含量与序列长度存在周期性依赖关系的有力证据。特别是,长度为6、10和14个残基的肽具有较高的β-折叠含量,而长度为8、12和16个残基的肽似乎以无规卷曲形式存在。这种不寻常的β-折叠周期性可能对我们理解β-折叠的形成以及设计受限的β-折叠和β-发夹模拟物具有重要意义。