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[谷氨酸棒杆菌ATSS13032细菌基因粘粒文库的构建及特性]

[Construction and characteristics of a cosmid library of genes of the bacterium Cornyebacterium glutamicum ATSS13032].

作者信息

Bukanov N O, Nashchokina O O, Borinskaia S A, Lobashev A V, Fonshteĭn M Iu, Gusiatiner M M, Debabov V G, Iankovskiĭ N K

机构信息

Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia.

出版信息

Genetika. 1998 Mar;34(3):438-41.

PMID:9589870
Abstract

A representative genomic library of the Corynebacterium glutamicum ATCC 13032 genes in a cosmid vector Lorist6 was created. The cosmids contain inserts of bacterial DNA obtained by partial digestion with the Sau3A I restrictase. Five hundred and thirty individual primary recombinant clones were transferred into the wells of microtiter plates, where they are now being preserved. The average size of the bacterial DNA inserts determined via a sum of restriction fragment sizes of recombinant molecules is about 38 kb. The capacity of the obtained gene library is 8.4 equivalents of the C. glutamicum genome, i.e., every fragment of the genome is on average represented by eight clones and is presented in at least one clone with the probability > 99%. Clone grids (sets of recombinant clones located on the hybridization membrane in regular and reproducible order) were created. Specificity of the created clone library and its representativeness were confirmed experimentally by hybridization of clone grids with DNA probes corresponding to unique regions of the Corynebacterium genome. A plasmid containing the pheA prephenate dehydratase gene, olygonucleotide corresponding to the lysC gene, and the 21 RNA probe obtained from the insert ends in different cosmids were used as probes. The created set of clones allows the construction of a cosmid contig overlapping the C. glutamicum genome and a physical genetic map on its base.

摘要

构建了一个用黏粒载体Lorist6装载谷氨酸棒杆菌ATCC 13032基因的代表性基因组文库。这些黏粒含有通过Sau3A I限制酶部分消化获得的细菌DNA插入片段。530个单个的初级重组克隆被转移到微量滴定板的孔中,目前保存在那里。通过重组分子的限制片段大小总和确定的细菌DNA插入片段的平均大小约为38 kb。所获得的基因文库容量为谷氨酸棒杆菌基因组的8.4倍,即基因组的每个片段平均由8个克隆代表,并且以>99%的概率至少存在于一个克隆中。创建了克隆网格(以规则且可重复的顺序位于杂交膜上的重组克隆集合)。通过将克隆网格与对应于谷氨酸棒杆菌基因组独特区域的DNA探针杂交,实验证实了所创建克隆文库的特异性及其代表性。含有苯丙氨酸解氨酶基因的质粒、对应于lysC基因的寡核苷酸以及从不同黏粒的插入片段末端获得的21个RNA探针被用作探针。所创建的克隆集合允许构建与谷氨酸棒杆菌基因组重叠的黏粒重叠群及其基础上的物理遗传图谱。

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