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本文引用的文献

1
THE PROPERTIES AND INTERACTIONS OF THE ISOLATER ALPHA AND BETA CHAINS OF HUMAN HAEMOGLOBIN. I. SEDIMENTATION AND ELECTROPHORETIC BEHAVIOUR.人血红蛋白分离的α和β链的性质与相互作用。I.沉降和电泳行为
J Mol Biol. 1965 May;12:183-92. doi: 10.1016/s0022-2836(65)80292-3.
2
Protein binding versus protein folding: the role of hydrophilic bridges in protein associations.蛋白质结合与蛋白质折叠:亲水桥在蛋白质缔合中的作用
J Mol Biol. 1997 Jan 10;265(1):68-84. doi: 10.1006/jmbi.1996.0712.
3
Stability of the heme-globin linkage in alphabeta dimers and isolated chains of human hemoglobin. A study of the heme transfer reaction from the immobilized proteins to albumin.人血红蛋白αβ二聚体和分离链中血红素-珠蛋白连接的稳定性。关于从固定化蛋白质到白蛋白的血红素转移反应的研究。
J Biol Chem. 1996 Apr 26;271(17):10130-6. doi: 10.1074/jbc.271.17.10130.
4
Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding.原子溶剂化参数集的比较:在蛋白质折叠和结合中的适用性与局限性
Protein Sci. 1995 Dec;4(12):2499-509. doi: 10.1002/pro.5560041206.
5
Principles of protein-protein interactions.蛋白质-蛋白质相互作用的原理。
Proc Natl Acad Sci U S A. 1996 Jan 9;93(1):13-20. doi: 10.1073/pnas.93.1.13.
6
Empirical scale of side-chain conformational entropy in protein folding.蛋白质折叠中侧链构象熵的经验标度。
J Mol Biol. 1993 Jun 5;231(3):825-39. doi: 10.1006/jmbi.1993.1329.
7
Site-directed mutagenesis in hemoglobin. Effect of some mutations at protein interfaces.血红蛋白中的定点诱变。蛋白质界面处某些突变的影响。
FEBS Lett. 1993 Jun 14;324(2):117-22. doi: 10.1016/0014-5793(93)81375-a.
8
Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller size.疏水残基突变为另一个更小尺寸的残基时,球状蛋白质稳定性最大变化的估计。
Protein Sci. 1993 May;2(5):733-8. doi: 10.1002/pro.5560020505.
9
Shape complementarity at protein/protein interfaces.蛋白质/蛋白质界面处的形状互补性。
J Mol Biol. 1993 Dec 20;234(4):946-50. doi: 10.1006/jmbi.1993.1648.
10
A role for surface hydrophobicity in protein-protein recognition.表面疏水性在蛋白质-蛋白质识别中的作用。
Protein Sci. 1994 May;3(5):717-29. doi: 10.1002/pro.5560030501.

将疏水残基埋藏于蛋白质亚基之间界面处的自由能。

Free energy of burying hydrophobic residues in the interface between protein subunits.

作者信息

Vallone B, Miele A E, Vecchini P, Chiancone E, Brunori M

机构信息

Istituto Pasteur-Fondazione Cenci Bolognetti e Centro di Biologia Molecolare del Consiglio Nazionale delle Ricerche, c/o Dipartimento di Scienze Biochimiche, Università di Roma "La Sapienza," P.le A. Moro 5, 00185 Rome, Italy.

出版信息

Proc Natl Acad Sci U S A. 1998 May 26;95(11):6103-7. doi: 10.1073/pnas.95.11.6103.

DOI:10.1073/pnas.95.11.6103
PMID:9600924
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC27592/
Abstract

We have obtained an experimental estimate of the free energy change associated with variations at the interface between protein subunits, a subject that has raised considerable interest since the concept of accessible surface area was introduced by Lee and Richards [Lee, B. & Richards, F. M. (1971) J. Mol. Biol. 55, 379-400]. We determined by analytical ultracentrifugation the dimer-tetramer equilibrium constant of five single and three double mutants of human Hb. One mutation is at the stationary alpha1 beta1 interface, and all of the others are at the sliding alpha1 beta2 interface where cleavage of the tetramer into dimers and ligand-linked allosteric changes are known to occur. A surprisingly good linear correlation between the change in the free energy of association of the mutants and the change in buried hydrophobic surface area was obtained, after corrections for the energetic cost of losing steric complementarity at the alphabeta dimer interface. The slope yields an interface stabilization free energy of -15 +/- 1.2 cal/mol upon burial of 1 A2 of hydrophobic surface, in very good agreement with the theoretical estimate given by Eisenberg and McLachlan [Eisenberg, D. & McLachlan, A. D. (1986) Nature (London) 319, 199-203].

摘要

我们已经获得了与蛋白质亚基间界面变化相关的自由能变化的实验估计值,自Lee和Richards提出可及表面积概念以来,这一主题引起了相当大的关注[Lee, B. & Richards, F. M. (1971) J. Mol. Biol. 55, 379 - 400]。我们通过分析超速离心法测定了人血红蛋白五个单突变体和三个双突变体的二聚体 - 四聚体平衡常数。一个突变位于固定的α1β1界面,其他所有突变都位于滑动的α1β2界面,已知在该界面会发生四聚体裂解为二聚体以及配体连接的变构变化。在对αβ二聚体界面处失去空间互补性的能量成本进行校正后,突变体结合自由能的变化与埋藏疏水表面积的变化之间获得了惊人的良好线性相关性。每埋藏1 Ų疏水表面,斜率得出的界面稳定自由能为 -15 ± 1.2 cal/mol,与Eisenberg和McLachlan给出的理论估计值[Eisenberg, D. & McLachlan, A. D. (1986) Nature (London) 319, 199 - 203]非常吻合。