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酿酒酵母七号和十五号染色体的物理图谱绘制,平均分辨率达3.5kb,以便进行全序列测序。

Physical mapping of chromosomes VII and XV of Saccharomyces cerevisiae at 3.5 kb average resolution to allow their complete sequencing.

作者信息

Tettelin H, Thierry A, Goffeau A, Dujon B

机构信息

Département des Biotechnologies (URA 1300 du CNRS and UFR927 Université P.M. Curie), Institut Pasteur, Paris, France.

出版信息

Yeast. 1998 May;14(7):601-16. doi: 10.1002/(SICI)1097-0061(199805)14:7<601::AID-YEA262>3.0.CO;2-R.

DOI:10.1002/(SICI)1097-0061(199805)14:7<601::AID-YEA262>3.0.CO;2-R
PMID:9639307
Abstract

The high resolution complete physical maps of chromosomes VII and XV were constructed to form the basis for sequencing these chromosomes as part of the European systematic sequencing programme of the yeast genome, using a unique cosmid library from strain FY1679, and an original top-down mapping strategy involving I-Sce I chromosome fragmentation. A total of 138 and 196 cosmid clones were used to construct the maps for VII and XV, respectively, forming two unique contigs that cover the entirety of chromosomes (1091 kb each), except the telomeric repeats. Colinearity of the cosmid inserts with yeast DNA was verified, and the physical maps were eventually compared with the independently generated genetic maps.

摘要

构建了VII号和XV号染色体的高分辨率完整物理图谱,作为酵母基因组欧洲系统测序计划的一部分,为这些染色体的测序奠定基础。使用来自FY1679菌株的独特粘粒文库,以及涉及I-Sce I染色体片段化的原始自上而下的作图策略。分别使用138个和196个粘粒克隆构建VII号和XV号染色体的图谱,形成两个独特的重叠群,覆盖了除端粒重复序列外的整个染色体(每条染色体1091 kb)。验证了粘粒插入片段与酵母DNA的共线性,并最终将物理图谱与独立生成的遗传图谱进行了比较。

相似文献

1
Physical mapping of chromosomes VII and XV of Saccharomyces cerevisiae at 3.5 kb average resolution to allow their complete sequencing.酿酒酵母七号和十五号染色体的物理图谱绘制,平均分辨率达3.5kb,以便进行全序列测序。
Yeast. 1998 May;14(7):601-16. doi: 10.1002/(SICI)1097-0061(199805)14:7<601::AID-YEA262>3.0.CO;2-R.
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Construction of a complete genomic library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3.7 kb resolution.酿酒酵母完整基因组文库的构建及第十一条染色体的3.7 kb分辨率物理图谱绘制。
Yeast. 1995 Feb;11(2):121-35. doi: 10.1002/yea.320110204.
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High-resolution cosmid mapping of the left arm of Saccharomyces cerevisiae chromosome XII; a first step towards an ordered sequencing approach.酿酒酵母第十二号染色体左臂的高分辨率黏粒图谱绘制;迈向有序测序方法的第一步。
Yeast. 1995 Jun 15;11(7):659-66. doi: 10.1002/yea.320110706.
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The DNA sequence of cosmid 14-13b from chromosome XIV of Saccharomyces cerevisiae reveals an unusually high number of overlapping open reading frames.来自酿酒酵母第十四条染色体的黏粒14 - 13b的DNA序列显示出异常大量的重叠开放阅读框。
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Physical, transcriptional and genetical mapping of a 24 kb DNA fragment located between the PMA1 and ATE1 loci on chromosome VII from Saccharomyces cerevisiae.酿酒酵母七号染色体上位于PMA1和ATE1基因座之间的一个24 kb DNA片段的物理、转录和遗传图谱分析。
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Molecular cloning of human telomeres in yeast.人类端粒在酵母中的分子克隆
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