Valegård K, van Scheltinga A C, Lloyd M D, Hara T, Ramaswamy S, Perrakis A, Thompson A, Lee H J, Baldwin J E, Schofield C J, Hajdu J, Andersson I
Department of Biochemistry, Uppsala University, Sweden.
Nature. 1998 Aug 20;394(6695):805-9. doi: 10.1038/29575.
Penicillins and cephalosporins are among the most widely used therapeutic agents. These antibiotics are produced from fermentation-derived materials as their chemical synthesis is not commercially viable. Unconventional steps in their biosynthesis are catalysed by Fe(II)-dependent oxidases/oxygenases; isopenicillin N synthase (IPNS) creates in one step the bicyclic nucleus of penicillins, and deacetoxycephalosporin C synthase (DAOCS) catalyses the expansion of the penicillin nucleus into the nucleus of cephalosporins. Both enzymes use dioxygen-derived ferryl intermediates in catalysis but, in contrast to IPNS, the ferryl form of DAOCS is produced by the oxidative splitting of a co-substrate, 2-oxoglutarate (alpha-ketoglutarate). This route of controlled ferryl formation and reaction is common to many mononuclear ferrous enzymes, which participate in a broader range of reactions than their well-characterized counterparts, the haem enzymes. Here we report the first crystal structure of a 2-oxoacid-dependent oxygenase. High-resolution structures for apo-DAOCS, the enzyme complexed with Fe(II), and with Fe(II) and 2-oxoglutarate, were obtained from merohedrally twinned crystals. Using a model based on these structures, we propose a mechanism for ferryl formation.
青霉素和头孢菌素是使用最为广泛的治疗药物。这些抗生素由发酵产物制成,因为其化学合成在商业上不可行。它们生物合成中的非常规步骤由依赖Fe(II)的氧化酶/加氧酶催化;异青霉素N合酶(IPNS)一步生成青霉素的双环核,而脱乙酰氧基头孢菌素C合酶(DAOCS)催化青霉素核扩展为头孢菌素核。两种酶在催化过程中都使用双氧衍生的铁酰中间体,但与IPNS不同,DAOCS的铁酰形式是由共底物2-氧代戊二酸(α-酮戊二酸)的氧化裂解产生的。这种受控的铁酰形成和反应途径在许多单核亚铁酶中很常见,这些酶参与的反应范围比其特征明确的对应物血红素酶更广。在此,我们报道了一种依赖2-氧代酸的加氧酶的首个晶体结构。从merohedrally孪晶中获得了脱辅基DAOCS、与Fe(II)络合的酶以及与Fe(II)和2-氧代戊二酸络合的酶的高分辨率结构。基于这些结构建立模型,我们提出了一种铁酰形成机制。