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核苷酸刚性

Nucleotide rigidity.

作者信息

Evans F E, Sarma R H

出版信息

Nature. 1976 Oct 14;263(5578):567-72. doi: 10.1038/263567a0.

DOI:10.1038/263567a0
PMID:980104
Abstract

It is show that in aqueous solution the backbone conformation of adenosine is as much flexible as that of 3'-AMP, 5'-AMP and 3', 5'-ADP indicating that nucleotides are not any more rigid than nucleosides. The flexible conformation of the monomeric components is conserved in the nucleotidyl units of destacked ApA, ApApA and poly(A), but it is not conserved in base stacked conditions. The findings are extended to guanosine, uridine and cytidine systems. It is projected that in aqueous solution, conformations of the individual nucleotidyl units of yeast tRNAhe are confined to the classically stable domains in the base stacked region and non-rigid flexible structures populate in the unstacked region comprising D16, D17, G20, U47 and A76.

摘要

结果表明,在水溶液中,腺苷的主链构象与3'-AMP、5'-AMP和3',5'-ADP一样具有柔性,这表明核苷酸并不比核苷更刚性。单体组分的柔性构象在解堆叠的ApA、ApApA和聚(A)的核苷酸单元中得以保留,但在碱基堆叠条件下则不被保留。这些发现扩展到了鸟苷、尿苷和胞苷系统。据推测,在水溶液中,酵母tRNAhe的各个核苷酸单元的构象在碱基堆叠区域局限于经典稳定结构域,而在包括D16、D17、G20、U47和A76的未堆叠区域中则存在非刚性的柔性结构。

相似文献

1
Nucleotide rigidity.核苷酸刚性
Nature. 1976 Oct 14;263(5578):567-72. doi: 10.1038/263567a0.
2
Conformational properties of adenylyl-3' leads to 5'-adenosine in aqueous solution.水溶液中腺苷-3′至5′-腺苷的构象性质。
Biochemistry. 1976 Feb 24;15(4):756-68. doi: 10.1021/bi00649a006.
3
Conformational properties of the furanose phosphate backbone in nucleic acids. A carbon-13 nuclear magnetic resonance study.核酸中呋喃糖磷酸主链的构象性质。一项碳-13核磁共振研究。
Biochemistry. 1977 May 31;16(11):2410-6. doi: 10.1021/bi00630a016.
4
Nuclear-magnetic-resonance study of the conformation of a dinucleotide in solution using the lanthanide probe method.利用镧系元素探针法对溶液中双核苷酸构象的核磁共振研究。
Eur J Biochem. 1979 Jun;97(1):93-101. doi: 10.1111/j.1432-1033.1979.tb13089.x.
5
An NMR relaxation study of polynucleotide - nucleotide interactions.多核苷酸-核苷酸相互作用的核磁共振弛豫研究。
Bioinorg Chem. 1975 Apr;4(3):225-33. doi: 10.1016/s0006-3061(00)80105-2.
6
A direct assignment of all base and anomeric Hi' signals in the proton spectrum of a trinucleoside diphosphate, ApApA: structure implications.三磷酸腺苷二磷酸(ApApA)质子谱中所有碱基和异头氢信号的直接归属:结构意义
FEBS Lett. 1975 May 1;53(2):213-6. doi: 10.1016/0014-5793(75)80022-6.
7
[Study of the hydration of nucleic acids (DAN and RNA) and their derivatives by an ultrasonic method].
Biofizika. 1975 Jan-Feb;20(1):20-2.
8
[Isolation of free nucleotides from various tissues. II. Isolation of adenosine-5-monophosphate, adenosinediphosphate, adenosinetriphosphate, guanosine, cytidine and uridine from ascites tumor of the mouse].[从各种组织中分离游离核苷酸。II. 从小鼠腹水瘤中分离5'-磷酸腺苷、二磷酸腺苷、三磷酸腺苷、鸟苷、胞苷和尿苷]
Biochim Biophys Acta. 1954 May;14(1):160-1. doi: 10.1016/0006-3002(54)90152-3.
9
Ap4A and Ap5A prefer folded unstacked conformations at pH 4-5, in sharp contrast with Ap2A and Ap3A.在pH值为4至5时,Ap4A和Ap5A更喜欢折叠的非堆积构象,这与Ap2A和Ap3A形成鲜明对比。
FEBS Lett. 1979 Nov 1;107(1):121-4. doi: 10.1016/0014-5793(79)80477-9.
10
[Study by nuclear magnetic resonance of complexes formed between divalent cobalt cations and several adenine nucleotides].[二价钴阳离子与几种腺嘌呤核苷酸形成的复合物的核磁共振研究]
Biochimie. 1973;55(8):845-50. doi: 10.1016/s0300-9084(73)80160-9.

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2
Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules.多聚胞苷酸、多聚腺苷酸和多聚尿苷酸作为同聚物或单个RNA分子内的片段在微秒时间尺度上的区分。
Biophys J. 1999 Dec;77(6):3227-33. doi: 10.1016/S0006-3495(99)77153-5.
3
Conformational analysis of a modified ribotetranucleoside triphosphate: m6(2)A-U-m6(2)A-U studied in aqueous solution by nuclear magnetic resonance at 500 MHz.
一种修饰的核糖四核苷三磷酸的构象分析:在500兆赫的核磁共振条件下于水溶液中研究的m6(2)A-U-m6(2)A-U
Nucleic Acids Res. 1981 Mar 25;9(6):1405-23. doi: 10.1093/nar/9.6.1405.
4
Spatial configuration of deoxyribotrinucleoside diphosphates in aqueous solution.脱氧核糖三磷酸二核苷酸在水溶液中的空间构型。
Nucleic Acids Res. 1978 Nov;5(11):4399-416. doi: 10.1093/nar/5.11.4399.