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自动化RNA筛选

Automated RNA selection.

作者信息

Cox J C, Rudolph P, Ellington A D

机构信息

Department of Chemistry and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712-1095, USA.

出版信息

Biotechnol Prog. 1998 Nov-Dec;14(6):845-50. doi: 10.1021/bp980097h.

DOI:10.1021/bp980097h
PMID:9841645
Abstract

In vitro selection can be used to generate nucleic acid ligands (aptamers) to target molecules ranging in size and structure from cations to cells. However, the selection process is repetitive and time-consuming. We have automated a protocol for in vitro selection using an augmented Beckman Biomek 2000 pipetting robot. The automated selection procedure requires the integration of four devices and the optimization of four molecular biology methods, and is one of the most complex automated protocols attempted to date. Initial attempts at selection yielded robust replication parasites, but optimization of the automated selection procedure suppressed the emergence of these parasites and led to the selection of true nucleic acid ligands. Automated selection can now be used to generate nucleic acid aptamers in days rather than weeks or months.

摘要

体外筛选可用于生成核酸配体(适配体),以靶向从阳离子到细胞等大小和结构各异的分子。然而,筛选过程既重复又耗时。我们利用一台增强型贝克曼Biomek 2000移液机器人实现了体外筛选方案的自动化。自动化筛选程序需要整合四种设备并优化四种分子生物学方法,是迄今为止尝试过的最复杂的自动化方案之一。最初的筛选尝试产生了大量复制性寄生虫,但自动化筛选程序的优化抑制了这些寄生虫的出现,并导致了真正核酸配体的筛选。现在,自动化筛选可在数天而非数周或数月内用于生成核酸适配体。

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Automated RNA selection.自动化RNA筛选
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引用本文的文献

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2
Aptamer-based targeted therapy.基于适配体的靶向治疗。
Adv Drug Deliv Rev. 2018 Sep;134:65-78. doi: 10.1016/j.addr.2018.08.005. Epub 2018 Aug 17.
3
Aptamer and its applications in neurodegenerative diseases.适体及其在神经退行性疾病中的应用。
Cell Mol Life Sci. 2017 Feb;74(4):683-695. doi: 10.1007/s00018-016-2345-4. Epub 2016 Aug 25.
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Highly Multiplexed RNA Aptamer Selection using a Microplate-based Microcolumn Device.基于微孔板微柱装置的高通量 RNA 适体选择。
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Integrated Microfluidic Isolation of Aptamers Using Electrophoretic Oligonucleotide Manipulation.利用电泳寡核苷酸操作的集成微流控适体分离法
Sci Rep. 2016 May 24;6:26139. doi: 10.1038/srep26139.
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Development of RNA aptamers as molecular probes for HER2(+) breast cancer study using cell-SELEX.使用细胞指数富集的配体系统进化技术开发RNA适配体作为HER2(+)乳腺癌研究的分子探针。
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Local neutral networks help maintain inaccurately replicating ribozymes.局部中性网络有助于维持复制不准确的核酶。
PLoS One. 2014 Oct 9;9(10):e109987. doi: 10.1371/journal.pone.0109987. eCollection 2014.
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Nucleic Acid aptamers: new methods for selection, stabilization, and application in biomedical science.核酸适体:新型选择方法、稳定化方法及其在生物医学科学中的应用。
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RAPID-SELEX for RNA aptamers.用于RNA适配体的快速指数富集配体系统进化技术
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