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翻译术语数据库(TransTerm)进行了扩展,纳入了完整的编码序列和非翻译区域。

TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions.

作者信息

Dalphin M E, Stockwell P A, Tate W P, Brown C M

机构信息

Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand.

出版信息

Nucleic Acids Res. 1999 Jan 1;27(1):293-4. doi: 10.1093/nar/27.1.293.

Abstract

TransTerm is a database of mRNA sequences and parameters useful for detecting translational control signals in general. TransTerm-98 has been expanded beyond previous years to include full coding sequences and UTRs, while retaining the original small contexts about the coding sequence start- and stop-codons. The database contains more than 130 000 non-redundant coding sequences with associated untranslated regions (UTRs) from over 450 species. This includes the complete genomes of 12 prokaryotic and one eukaryotic organism. Several coding sequence parameters are available: coding sequence length, Nc, GC3 and, when it is computable, Codon Adaptation Index (CAI). Codon usage tables and summaries of start- and stop-codon contexts are also included. TransTerm-98 has both a relational database form with a WWW interface and a flatfile format, also available by Internet browser. TransTerm is available at: http://biochem.otago.ac.nz:800/Transterm/homepage.h tml

摘要

TransTerm是一个包含mRNA序列和参数的数据库,总体上有助于检测翻译控制信号。与前几年相比,TransTerm - 98已得到扩展,纳入了完整的编码序列和非翻译区(UTR),同时保留了关于编码序列起始密码子和终止密码子的原始小上下文。该数据库包含来自450多个物种的超过130000个非冗余编码序列以及相关的非翻译区(UTR)。这包括12种原核生物和1种真核生物的完整基因组。有几个编码序列参数可供使用:编码序列长度、Nc、GC3,以及在可计算时的密码子适应指数(CAI)。还包括密码子使用表以及起始密码子和终止密码子上下文的摘要。TransTerm - 98既有带万维网界面的关系数据库形式,也有平面文件格式,也可通过互联网浏览器获取。可通过以下网址访问TransTerm:http://biochem.otago.ac.nz:800/Transterm/homepage.html

相似文献

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TransTerm: a database of translational signals.翻译术语库:一个翻译信号数据库。
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Nucleic Acids Res. 2009 Jan;37(Database issue):D72-6. doi: 10.1093/nar/gkn763. Epub 2008 Nov 4.

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