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翻译术语库：一个翻译信号数据库。

TransTerm: a database of translational signals.

作者信息

Dalphin M E, Brown C M, Stockwell P A, Tate W P

机构信息

Department of Biochemistry, University of Otago, Dunedin, New Zealand.

出版信息

Nucleic Acids Res. 1996 Jan 1;24(1):216-8. doi: 10.1093/nar/24.1.216.

DOI:10.1093/nar/24.1.216
PMID:8594584
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC145585/
Abstract

The TransTerm database of sequence contexts of stop and start codons has been expanded to include approximately 50% more species than last year's release. It now contains 148 organisms and >39 500 coding sequences; it is now available on the World Wide Web. The database includes: (i) initiation and termination sequence contexts organized by species; (ii) summary parameters about the individual sequences (sequence length, GC%, GC3, Nc, CAI) in addition to tables of base frequencies for each species' stop and start codon sequence context; (iii) species codon usage tables; and (iv) summary tables of stop signal frequency.

摘要

终止密码子和起始密码子序列上下文的TransTerm数据库已得到扩充，所涵盖的物种比去年发布时增加了约50%。目前该数据库包含148种生物和超过39500个编码序列，现已在万维网上提供。该数据库包括：(i) 按物种组织的起始和终止序列上下文；(ii) 除了每个物种终止密码子和起始密码子序列上下文的碱基频率表之外，关于各个序列的汇总参数（序列长度、GC%、GC3、Nc、CAI）；(iii) 物种密码子使用表；以及(iv) 终止信号频率汇总表。

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本文引用的文献

1
The translational termination signal database.翻译终止信号数据库。
Nucleic Acids Res. 1993 Jul 1;21(13):3119-23. doi: 10.1093/nar/21.13.3119.
2
The EMBL data library.欧洲分子生物学实验室数据库
Nucleic Acids Res. 1993 Jul 1;21(13):2967-71. doi: 10.1093/nar/21.13.2967.
3
GenBank.基因银行
Nucleic Acids Res. 1993 Jul 1;21(13):2963-5. doi: 10.1093/nar/21.13.2963.
4
The second to last amino acid in the nascent peptide as a codon context determinant.新生肽中倒数第二个氨基酸作为密码子上下文决定因素。
EMBO J. 1994 Jan 1;13(1):249-57. doi: 10.1002/j.1460-2075.1994.tb06255.x.
5
Quantitative analysis of ribosome binding sites in E.coli.大肠杆菌中核糖体结合位点的定量分析。
Nucleic Acids Res. 1994 Apr 11;22(7):1287-95. doi: 10.1093/nar/22.7.1287.
6
Major codon preference: theme and variations.主要密码子偏好性：主题与变异
Biochem Soc Trans. 1993 Nov;21(4):841-6. doi: 10.1042/bst0210841.
7
Codon usage: mutational bias, translational selection, or both?密码子使用：是突变偏向、翻译选择，还是二者皆有？
Biochem Soc Trans. 1993 Nov;21(4):835-41. doi: 10.1042/bst0210835.
8
On the relationship between preferred termination codon contexts and nonsense suppression in human cells.关于人类细胞中偏好的终止密码子上下文与无义抑制之间的关系。
Nucleic Acids Res. 1994 Jan 11;22(1):15-9. doi: 10.1093/nar/22.1.15.
9
Codon preference in the terminal region of E. coli genes and evolution of stop codon usage.
J Theor Biol. 1994 Jun 21;168(4):461-3. doi: 10.1006/jtbi.1994.1124.
10
Termination of protein synthesis.蛋白质合成的终止。
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