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翻译信号数据库TransTerm：更多生物体，完整基因组。

The translational signal database, TransTerm: more organisms, complete genomes.

作者信息

Dalphin M E, Brown C M, Stockwell P A, Tate W P

机构信息

Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand.

出版信息

Nucleic Acids Res. 1997 Jan 1;25(1):246-7. doi: 10.1093/nar/25.1.246.

DOI:10.1093/nar/25.1.246
PMID:9016547
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC146403/
Abstract

TransTerm is a database of initiation and termination sequence contexts from more than 250 organisms listed in GenBank, including the four complete genomes:Haemophilus influenzae, Methanococcus jannaschii, Mycoplasma genitalium,and Saccharomyces cerevisiae. For the current release, more than 60 000 coding sequences were analysed. The tabulated data include initiation and termination contexts organised by species along with quantitative parameters about individual coding sequences (length, %GC, GC3, Nc and CAI). There are also tables of initiation- and termination-region nucleotide-frequencies, codon usage tables and summaries of stop signal usage. TransTerm is available on the World Wide Web at: http://biochem.otago.ac.nz:800/Transterm/homepage.h tml

摘要

TransTerm是一个来自GenBank中列出的250多种生物的起始和终止序列上下文的数据库，包括四个完整基因组：流感嗜血杆菌、詹氏甲烷球菌、生殖道支原体和酿酒酵母。对于当前版本，分析了超过60000个编码序列。表格数据包括按物种组织的起始和终止上下文，以及关于单个编码序列的定量参数（长度、%GC、GC3、Nc和CAI）。还有起始区和终止区核苷酸频率表、密码子使用表以及终止信号使用总结。可通过万维网访问TransTerm：http://biochem.otago.ac.nz:800/Transterm/homepage.html

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The translational signal database, TransTerm: more organisms, complete genomes.翻译信号数据库TransTerm：更多生物体，完整基因组。
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本文引用的文献

1
Three, four or more: the translational stop signal at length.三个、四个或更多：终止翻译的信号长度。
Mol Microbiol. 1996 Jul;21(2):213-9. doi: 10.1046/j.1365-2958.1996.6391352.x.
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Hidden infidelities of the translational stop signal.翻译终止信号的隐匿不忠行为
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Recoding: dynamic reprogramming of translation.重新编码：翻译的动态重编程。
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Knowing when not to stop: selenocysteine incorporation in eukaryotes.知晓何时不应停止：真核生物中的硒代半胱氨酸掺入
Trends Biochem Sci. 1996 Jun;21(6):203-8.
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Interpreting cDNA sequences: some insights from studies on translation.解读cDNA序列：翻译研究的一些见解
Mamm Genome. 1996 Aug;7(8):563-74. doi: 10.1007/s003359900171.
8
Initiation of protein synthesis in eukaryotic cells.真核细胞中蛋白质合成的起始
Eur J Biochem. 1996 Mar 15;236(3):747-71. doi: 10.1111/j.1432-1033.1996.00747.x.
9
Structure of the C-terminal end of the nascent peptide influences translation termination.新生肽C末端的结构影响翻译终止。
EMBO J. 1996 Apr 1;15(7):1696-704.
10
Context effects on misreading and suppression at UAG codons in human cells.人细胞中UAG密码子处上下文对误读和抑制的影响。
Mol Cell Biol. 1995 Dec;15(12):6593-600. doi: 10.1128/MCB.15.12.6593.

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