PlantCARE，一个植物顺式作用调控元件数据库。
PlantCARE, a plant cis-acting regulatory element database.
作者信息
Rombauts S, Déhais P, Van Montagu M, Rouzé P
机构信息
Laboratorium voor Genetica, Vlaams Interuniversitair Instituut voor Biotechnologie (VIB), Universiteit Gent,K.L. Ledeganckstraat 35, B-9000 Gent, Belgium.
出版信息
Nucleic Acids Res. 1999 Jan 1;27(1):295-6. doi: 10.1093/nar/27.1.295.
Abstract
PlantCARE is a database of plant cis- acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional. The information on these sites is given by matrices, consensus and individual site sequences on particular genes, depending on the available information. PlantCARE is a relational database available via the web at the URL: http://sphinx.rug.ac.be:8080/PlantCARE/
摘要
PlantCARE是一个关于植物顺式作用调控元件、增强子和阻遏物的数据库。除了在序列上发现的转录基序外，它还提供了一个指向EMBL条目的链接，该条目包含完整的基因序列以及对基序发挥功能的条件的描述。这些位点的信息根据可用信息，通过矩阵、特定基因上的共有序列和单个位点序列给出。PlantCARE是一个关系型数据库，可通过以下网址在网络上访问：http://sphinx.rug.ac.be:8080/PlantCARE/
相似文献
1
PlantCARE, a plant cis-acting regulatory element database.PlantCARE，一个植物顺式作用调控元件数据库。
Nucleic Acids Res. 1999 Jan 1;27(1):295-6. doi: 10.1093/nar/27.1.295.
2
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.PlantCARE，一个植物顺式作用调控元件数据库以及一个用于启动子序列计算机分析工具的门户网站。
Nucleic Acids Res. 2002 Jan 1;30(1):325-7. doi: 10.1093/nar/30.1.325.
3
Plant cis-acting regulatory DNA elements (PLACE) database: 1999.植物顺式作用调控DNA元件（PLACE）数据库：1999年版。
Nucleic Acids Res. 1999 Jan 1;27(1):297-300. doi: 10.1093/nar/27.1.297.
4
Transcription Regulatory Regions Database (TRRD):its status in 1999.转录调控区数据库（TRRD）：1999年时的状况
Nucleic Acids Res. 1999 Jan 1;27(1):303-6. doi: 10.1093/nar/27.1.303.
5
AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.AGRIS：拟南芥基因调控信息服务器，一个关于拟南芥顺式调控元件和转录因子的信息资源。
BMC Bioinformatics. 2003 Jun 23;4:25. doi: 10.1186/1471-2105-4-25.
6
Identification of enhancer and silencer regions involved in salt-responsive expression of Crassulacean acid metabolism (CAM) genes in the facultative halophyte Mesembryanthemum crystallinum.在兼性盐生植物冰花中参与景天酸代谢（CAM）基因盐响应表达的增强子和沉默子区域的鉴定。
Plant Mol Biol. 1995 May;28(2):205-18. doi: 10.1007/BF00020241.
7
In planta analysis of a cis-regulatory cytokinin response motif in Arabidopsis and identification of a novel enhancer sequence.在拟南芥中分析顺式调控细胞分裂素反应元件，并鉴定一个新的增强子序列。
Plant Cell Physiol. 2013 Jul;54(7):1079-92. doi: 10.1093/pcp/pct060. Epub 2013 Apr 24.
8
Genome-wide identification of potential plant E2F target genes.全基因组范围内潜在植物E2F靶基因的鉴定。
Plant Physiol. 2005 Sep;139(1):316-28. doi: 10.1104/pp.105.066290. Epub 2005 Aug 26.
9
PLACE: a database of plant cis-acting regulatory DNA elements.PLACE：植物顺式作用调控DNA元件数据库。
Nucleic Acids Res. 1998 Jan 1;26(1):358-9. doi: 10.1093/nar/26.1.358.
10
The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana.拟南芥中转录反应多样性的调控密码及其与基因组结构特性的关系。
PLoS Genet. 2007 Feb 9;3(2):e11. doi: 10.1371/journal.pgen.0030011. Epub 2006 Dec 6.
引用本文的文献
1
Genome-wide molecular characterization and expression profiling of the cysteine protease gene family in maize.玉米中半胱氨酸蛋白酶基因家族的全基因组分子特征及表达谱分析
BMC Genomics. 2025 Sep 1;26(1):789. doi: 10.1186/s12864-025-12003-z.
2
Genome-wide identification and functional characterization of magnesium transporter (MGT) gene family in soybean (Glycine max L.) and their expression profiles in response to aphid infestation, dehydration, and salt stresses.大豆（Glycine max L.）中镁转运蛋白（MGT）基因家族的全基因组鉴定、功能表征及其对蚜虫侵害、脱水和盐胁迫的表达谱分析
PLoS One. 2025 Aug 29;20(8):e0330440. doi: 10.1371/journal.pone.0330440. eCollection 2025.
3
Genome-Wide Identification of the HD-ZIP Transcription Factor Family in Maize and Functional Analysis of the Role of in Seed Size.玉米HD-ZIP转录因子家族的全基因组鉴定及其在种子大小方面作用的功能分析
Plants (Basel). 2025 Aug 10;14(16):2477. doi: 10.3390/plants14162477.
4
Network-based identification of hub transcription factors associated with benzylisoquinoline alkaloid biosynthesis in .基于网络鉴定与[具体植物名称]中苄基异喹啉生物碱生物合成相关的枢纽转录因子 。
需注意，原文中“in.”后面缺少具体植物名称等关键信息，翻译时根据实际情况进行了补充说明。
Biochem Biophys Rep. 2025 Jul 23;43:102147. doi: 10.1016/j.bbrep.2025.102147. eCollection 2025 Sep.
5
Genome-wide identification of C1-1i-ZFP genes and functional analysis of ZFP6a gene from Platanus × acerifolia.悬铃木C1-1i-ZFP基因的全基因组鉴定及ZFP6a基因的功能分析
Plant Cell Rep. 2025 Jul 7;44(8):170. doi: 10.1007/s00299-025-03552-4.
6
Identification of the ACA/ECA gene family and preliminary verification of their functional in calcium transport in lettuce.生菜中ACA/ECA基因家族的鉴定及其在钙转运中功能的初步验证。
Sci Rep. 2025 Jul 1;15(1):20370. doi: 10.1038/s41598-025-08671-2.
7
Identification and characterization of nine genes subfamily in .鉴定和表征其中的九个基因亚家族。 （原英文表述不完整，推测补充完整后大概是这样的意思，仅根据现有英文翻译）
Plant Signal Behav. 2025 Dec;20(1):2527380. doi: 10.1080/15592324.2025.2527380. Epub 2025 Jul 1.
8
Genome-Wide Identification and Heat Stress-Induced Expression Profiling of the Gene Family in .中的基因家族的全基因组鉴定及热应激诱导表达谱分析
Biology (Basel). 2025 May 25;14(6):602. doi: 10.3390/biology14060602.
9
Genome-Wide Identification and Characterization of the mTERF Gene Family in Spinach and the Role of in Response to Heat Stress.菠菜中mTERF基因家族的全基因组鉴定与特征分析及其在热胁迫响应中的作用
Plants (Basel). 2025 May 22;14(11):1570. doi: 10.3390/plants14111570.
10
Genome-wide identification of PP2A gene family in reveals the potential role of in abiotic stress.全基因组范围内对PP2A基因家族的鉴定揭示了其在非生物胁迫中的潜在作用。
PeerJ. 2025 May 27;13:e19431. doi: 10.7717/peerj.19431. eCollection 2025.
Zotero 插件