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O-GLYCBASE 4.0版:O-糖基化蛋白的修订数据库。

O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins.

作者信息

Gupta R, Birch H, Rapacki K, Brunak S, Hansen J E

机构信息

Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark.

出版信息

Nucleic Acids Res. 1999 Jan 1;27(1):370-2. doi: 10.1093/nar/27.1.370.

Abstract

O-GLYCBASE is a database of glycoproteins with O-linked glycosylation sites. Entries with at least one experimentally verified O-glycosylation site have been compiled from protein sequence databases and literature. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 4.0 contains 179 protein entries, an approximate 15% increase over the last version. Sequence logos representing the acceptor specificity patterns for GalNAc, GlcNAc, mannosyl and xylosyl transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu.dk/databases/OGLYCBASE/

摘要

O-GLYCBASE是一个具有O-连接糖基化位点的糖蛋白数据库。已从蛋白质序列数据库和文献中汇编了至少有一个经实验验证的O-糖基化位点的条目。每个条目包含有关所涉及聚糖、物种、序列、文献参考以及与其他数据库的http链接交叉引用的信息。第4.0版包含179个蛋白质条目,比上一版大约增加了15%。展示了代表GalNAc、GlcNAc、甘露糖基和木糖基转移酶受体特异性模式的序列标识。可通过万维网访问O-GLYCBASE数据库,网址为http://www.cbs.dtu.dk/databases/OGLYCBASE/

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