O-GLYCBASE 2.0版：O-糖基化蛋白的修订数据库。
O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins.
作者信息
Hansen J E, Lund O, Rapacki K, Brunak S
机构信息
Center for Biological Sequence Analysis, The Technical University of Denmark, Building 206, DK-2800 Lyngby, Denmark.
出版信息
Nucleic Acids Res. 1997 Jan 1;25(1):278-82. doi: 10.1093/nar/25.1.278.
Abstract
O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is now fully cross-referenced to the SWISS-PROT, PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.
摘要
O-GLYCBASE是一个关于糖蛋白及其O-连接糖基化位点的信息更新数据库。条目是根据文献以及SWISS-PROT数据库汇编和修订的。条目包括有关物种、序列、糖基化位点和聚糖类型的信息。O-GLYCBASE现在已与SWISS-PROT、PIR、PROSITE、PDB、EMBL、HSSP、LISTA和MIM数据库完全交叉引用。与1.0版本相比，条目数量增加了34%。对20%的条目进行了O-聚糖分配的修订。展示了GalNAc、甘露糖和GlcNAc转移酶受体特异性模式的序列标识。O-GLYCBASE数据库可通过万维网或匿名FTP获取。
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