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肽衍生恶唑和噻唑的从头算计算:改进的AMBER力场分子力学参数

Ab initio calculations on peptide-derived oxazoles and thiazoles: improved molecular mechanics parameters for the AMBER force field.

作者信息

Boden C D, Pattenden G

机构信息

Department of Chemistry, Nottingham University, U.K.

出版信息

J Comput Aided Mol Des. 1999 Mar;13(2):153-66. doi: 10.1023/a:1008044108821.

Abstract

Ab initio calculations at the RHF/6-31G* and MP2/6-31G*//RHF/6-31G* levels of theory are performed for 2-methyl-4-carboxamido-oxazoles and -thiazoles, including rotational profiles for the ring-carboxamide bond, which showed the expected conjugation and hydrogen bonding effects. On the basis of these data, newly optimised stretch, bend and torsional parameters for the AMBER* force field are derived, along with CHELPG-fitted partial atomic charges.

摘要

在RHF/6-31G和MP2/6-31G//RHF/6-31G理论水平上对2-甲基-4-羧酰胺基恶唑和噻唑进行了从头算计算,包括环-羧酰胺键的旋转轮廓,其显示出预期的共轭和氢键效应。基于这些数据,推导了AMBER力场新的优化拉伸、弯曲和扭转参数,以及CHELPG拟合的部分原子电荷。

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