根癌土壤杆菌复杂基因组的联合遗传图谱和物理图谱
Combined genetic and physical map of the complex genome of Agrobacterium tumefaciens.
作者信息
Goodner B W, Markelz B P, Flanagan M C, Crowell C B, Racette J L, Schilling B A, Halfon L M, Mellors J S, Grabowski G
机构信息
Department of Biology, University of Richmond, Richmond, Virginia 23173, USA.
出版信息
J Bacteriol. 1999 Sep;181(17):5160-6. doi: 10.1128/JB.181.17.5160-5166.1999.
Abstract
A combined genetic and physical map of the Agrobacterium tumefaciens A348 (derivative of C58) genome was constructed to address the discrepancy between initial single-chromosome genetic maps and more recent physical mapping data supporting the presence of two nonhomologous chromosomes. The combined map confirms the two-chromosome genomic structure and the correspondence of the initial genetic maps to the circular chromosome. The linear chromosome is almost devoid of auxotrophic markers, which probably explains why it was missed by genetic mapping studies.
摘要
构建了根癌农杆菌A348（C58的衍生物）基因组的遗传图谱和物理图谱的组合，以解决最初的单染色体遗传图谱与最近支持存在两条非同源染色体的物理图谱数据之间的差异。组合图谱证实了双染色体基因组结构以及最初遗传图谱与环状染色体的对应关系。线性染色体几乎没有营养缺陷型标记，这可能解释了为什么它在遗传图谱研究中被遗漏。
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本文引用的文献
1
A PLANT-TUMOR OF BACTERIAL ORIGIN.一种细菌起源的植物肿瘤。
Science. 1907 Apr 26;25(643):671-3. doi: 10.1126/science.25.643.671.
2
Crown gall disease and hairy root disease : a sledgehammer and a tackhammer.冠瘿病和发根瘤病：大材小用。
Plant Physiol. 1990 Feb;92(2):281-5. doi: 10.1104/pp.92.2.281.
3
The Vibrio cholerae genome contains two unique circular chromosomes.霍乱弧菌基因组包含两条独特的环状染色体。
Proc Natl Acad Sci U S A. 1998 Nov 24;95(24):14464-9. doi: 10.1073/pnas.95.24.14464.
4
Unconventional genomic organization in the alpha subgroup of the Proteobacteria.变形菌门α亚群中的非常规基因组组织。
J Bacteriol. 1998 May;180(10):2749-55. doi: 10.1128/JB.180.10.2749-2755.1998.
5
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.嗜热栖热菌的全基因组
Nature. 1998 Mar 26;392(6674):353-8. doi: 10.1038/32831.
6
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.嗜热硫酸盐还原古菌富氏古球菌的全基因组序列。
Nature. 1997 Nov 27;390(6658):364-70. doi: 10.1038/37052.
7
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.革兰氏阳性细菌枯草芽孢杆菌的全基因组序列。
Nature. 1997 Nov 20;390(6657):249-56. doi: 10.1038/36786.
8
Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.嗜热自养甲烷杆菌δH的全基因组序列：功能分析与比较基因组学
J Bacteriol. 1997 Nov;179(22):7135-55. doi: 10.1128/jb.179.22.7135-7155.1997.
9
Low-resolution sequencing of Rhodobacter sphaeroides 2.4.1T: chromosome II is a true chromosome.球形红细菌2.4.1T的低分辨率测序：二号染色体是一条真正的染色体。
Microbiology (Reading). 1997 Oct;143 ( Pt 10):3085-3099. doi: 10.1099/00221287-143-10-3085.
10
The complete genome sequence of Escherichia coli K-12.大肠杆菌K-12的全基因组序列。
Science. 1997 Sep 5;277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
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