• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过场依赖2H-NMR弛豫和线形分析研究晶体蛋白中的主链运动。

Backbone motions in a crystalline protein from field-dependent 2H-NMR relaxation and line-shape analysis.

作者信息

Mack J W, Usha M G, Long J, Griffin R G, Wittebort R J

机构信息

Department of Biochemistry and Molecular Biology, Howard University College of Medicine, Washington, DC, USA.

出版信息

Biopolymers. 2000 Jan;53(1):9-18. doi: 10.1002/(SICI)1097-0282(200001)53:1<9::AID-BIP2>3.0.CO;2-6.

DOI:10.1002/(SICI)1097-0282(200001)53:1<9::AID-BIP2>3.0.CO;2-6
PMID:10644947
Abstract

We have used 2H-nmr to study backbone dynamics of the 2H-labeled, slowly exchanging amide sites of fully hydrated, crystalline hen egg white lysozyme. Order parameters are determined from the residual quadrupole coupling and values increase from S2 = 0.85 at 290 K to S2 = 0.94 at 200 K. Dynamical rates are determined from spin-lattice relaxation at three nmr frequencies (38.8, 61.5, and 76.7 MHz). The approach used here is thus distinct from solution nmr studies where dynamical amplitudes and rates are both determined from relaxation measurements. At temperatures below 250 K, relaxation is independent of the nmr frequency indicating that backbone motions are fast compared to the nmr frequencies. However, as the temperature is increased above 250 K, relaxation is significantly more efficient at the lowest frequency, which shows, in addition, the presence of motions that are slow compared to the nmr frequencies. Using the values of S2 determined from the residual quadrupole coupling and a model-free relaxation formalism that allows for fast and slow internal motions, we conclude that these slow motions have correlation times in the range of 0.1 to 1.0 microsecond and are effectively frozen out at 250 K where fast motions of the amide planes with approximately 15 ps effective correlation times and 9 degrees rms amplitudes dominate relaxation. The fast internal motions increase slightly in amplitude as the temperature rises toward 290 K, but the correlation time, as is also observed in solution nmr studies of RNase H, is approximately constant. These findings are consistent with hypotheses of dynamic glass transitions in hydrated proteins arising from temperature-dependent damping of harmonic modes of motion above the transition point.

摘要

我们使用2H核磁共振来研究完全水合的结晶鸡蛋清溶菌酶中2H标记的、缓慢交换酰胺位点的主链动力学。通过残余四极耦合确定序参量,其值从290 K时的S2 = 0.85增加到200 K时的S2 = 0.94。动力学速率通过在三个核磁共振频率(38.8、61.5和76.7 MHz)下的自旋晶格弛豫来确定。因此,这里使用的方法与溶液核磁共振研究不同,在溶液核磁共振研究中,动力学振幅和速率均由弛豫测量确定。在低于250 K的温度下,弛豫与核磁共振频率无关,这表明主链运动比核磁共振频率快。然而,当温度升高到250 K以上时,在最低频率下弛豫效率显著更高,这还表明存在比核磁共振频率慢的运动。利用从残余四极耦合确定的S2值以及允许快速和慢速内部运动的无模型弛豫形式,我们得出结论,这些慢速运动的相关时间在0.1到1.0微秒范围内,并且在250 K时有效地冻结,此时酰胺平面的快速运动以约15皮秒的有效相关时间和9度的均方根振幅主导弛豫。随着温度升高到290 K,快速内部运动的振幅略有增加,但相关时间与核糖核酸酶H的溶液核磁共振研究中观察到的情况一样,大致保持恒定。这些发现与水合蛋白质中动态玻璃化转变的假设一致,该假设源于转变点以上运动谐波模式的温度依赖性阻尼。

相似文献

1
Backbone motions in a crystalline protein from field-dependent 2H-NMR relaxation and line-shape analysis.通过场依赖2H-NMR弛豫和线形分析研究晶体蛋白中的主链运动。
Biopolymers. 2000 Jan;53(1):9-18. doi: 10.1002/(SICI)1097-0282(200001)53:1<9::AID-BIP2>3.0.CO;2-6.
2
Hydration dependence of backbone and side chain polylysine dynamics: a 13C solid-state NMR and IR spectroscopy study.主链和侧链聚赖氨酸动力学的水合依赖性:一项13C固态核磁共振和红外光谱研究。
Biopolymers. 2004 Jan;73(1):1-15. doi: 10.1002/bip.10540.
3
Dynamics of the three methionyl side chains of Streptomyces subtilisin inhibitor. Deuterium NMR studies in solution and in the solid state.链霉菌枯草杆菌蛋白酶抑制剂三个甲硫氨酰侧链的动力学。溶液和固态中的氘核磁共振研究。
Protein Sci. 1996 Jan;5(1):127-39. doi: 10.1002/pro.5560050116.
4
Characterization of enzyme motions by solution NMR relaxation dispersion.通过溶液核磁共振弛豫色散对酶运动进行表征。
Acc Chem Res. 2008 Feb;41(2):214-21. doi: 10.1021/ar700132n. Epub 2008 Feb 19.
5
High-resolution field-cycling NMR studies of a DNA octamer as a probe of phosphodiester dynamics and comparison with computer simulation.以DNA八聚体为磷酸二酯动力学探针的高分辨率场循环核磁共振研究及与计算机模拟的比较。
Biochemistry. 2004 Mar 30;43(12):3637-50. doi: 10.1021/bi035979q.
6
DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides.DNA双链动力学:对含有均匀13C标记嘌呤核苷酸的十聚体进行的核磁共振弛豫研究。
J Magn Reson. 1998 Dec;135(2):310-33. doi: 10.1006/jmre.1998.1584.
7
Extreme-values statistics and dynamics of water at protein interfaces.极端值统计学与蛋白质界面上水的动力学。
J Phys Chem B. 2011 Nov 10;115(44):12845-58. doi: 10.1021/jp2053426. Epub 2011 Oct 18.
8
Analysis of the internal motion of free and ligand-bound human lysozyme by use of 15N NMR relaxation measurement: a comparison with those of hen lysozyme.利用15N NMR弛豫测量分析游离和配体结合的人溶菌酶的内部运动:与鸡溶菌酶的比较。
Protein Sci. 2000 Sep;9(9):1669-84. doi: 10.1110/ps.9.9.1669.
9
A comparison of 15N NMR relaxation measurements with a molecular dynamics simulation: backbone dynamics of the glucocorticoid receptor DNA-binding domain.15N核磁共振弛豫测量与分子动力学模拟的比较:糖皮质激素受体DNA结合结构域的主链动力学
Proteins. 1993 Dec;17(4):375-90. doi: 10.1002/prot.340170406.
10
An investigation of the dynamics of ribosomal protein L9 using heteronuclear NMR relaxation measurements.利用异核核磁共振弛豫测量对核糖体蛋白L9动力学的研究。
J Mol Biol. 1998 Aug 21;281(3):539-51. doi: 10.1006/jmbi.1998.1946.

引用本文的文献

1
Basic experiments in H static NMR for the characterization of protein side-chain dynamics.用于蛋白质侧链动力学特性描述的 H 静磁场 NMR 基础实验。
Methods. 2018 Sep 15;148:136-145. doi: 10.1016/j.ymeth.2018.04.030. Epub 2018 Apr 27.
2
Static solid-state H NMR methods in studies of protein side-chain dynamics.用于蛋白质侧链动力学研究的静态固态氢核磁共振方法。
Prog Nucl Magn Reson Spectrosc. 2017 Aug;101:1-17. doi: 10.1016/j.pnmrs.2017.02.001. Epub 2017 Mar 14.
3
Internal protein dynamics on ps to μs timescales as studied by multi-frequency (15)N solid-state NMR relaxation.
通过多频(15)N 固态 NMR 弛豫研究 ps 到 μs 时间尺度上的内部蛋白质动力学。
J Biomol NMR. 2013 Nov;57(3):219-35. doi: 10.1007/s10858-013-9782-2. Epub 2013 Sep 19.
4
Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.使用MAS固态核磁共振光谱对蛋白质中主链运动进行定量分析。
J Biomol NMR. 2009 Sep;45(1-2):197-206. doi: 10.1007/s10858-009-9348-5. Epub 2009 Jul 24.