Suppr超能文献

Ill-conditioned Shake-and-Bake: the trap of the false minimum.

作者信息

Xu H, Weeks C M, Deacon A M, Miller R, Hauptman H A

机构信息

Hauptman-Woodward Medical Research Institute, Buffalo, NY 14203, USA.

出版信息

Acta Crystallogr A. 2000 Mar;56 ( Pt 2):112-8. doi: 10.1107/s0108767399014786.

Abstract

The alternation of phase refinement with the imposition of real-space constraints is the essence of the Shake-and-Bake procedure. Typically, these constraints prevent trial structures from falling into local minima. Nevertheless, P1 structures appear to migrate to false minima with significant frequency. These false minima are characterized by the presence of a large 'uranium' peak on the corresponding Fourier map. Fortunately, they can be recognized and avoided by considering the values of the minimal function both before and after the application of constraints. However, it appears that finding solutions for large P1 structures is likely also to require parameter-shift conditions different from those that have been found to work well in other space groups. In fact, these conditions often yield an unusually high percentage of solutions.

摘要

相似文献

1
Ill-conditioned Shake-and-Bake: the trap of the false minimum.
Acta Crystallogr A. 2000 Mar;56 ( Pt 2):112-8. doi: 10.1107/s0108767399014786.
2
P1 Shake-and-Bake: can success be guaranteed?
Acta Crystallogr D Biol Crystallogr. 2000 Feb;56(Pt 2):238-40. doi: 10.1107/s0907444999014961.
3
Exponential Shake-and-Bake: theoretical basis and applications.指数型摇床烘焙法:理论基础与应用
Acta Crystallogr A. 1999 Sep 1;55 ( Pt 5):891-900. doi: 10.1107/s0108767399003918.
4
Incorporating tangent refinement in the Shake-and-Bake formalism.
Acta Crystallogr A. 1997 Jul 1;53 ( Pt 4):436-44. doi: 10.1107/s0108767397003279.
6
Now we're cooking: new successes for shake-and-bake.
Structure. 1997 Apr 15;5(4):469-72. doi: 10.1016/s0969-2126(97)00203-7.
7
Optimizing Shake-and-Bake for proteins.优化蛋白质的摇床烘焙法。
Acta Crystallogr D Biol Crystallogr. 1999 Feb;55(Pt 2):492-500. doi: 10.1107/s0907444998012633.
8
The Shake-and-Bake structure determination of triclinic lysozyme.三斜晶系溶菌酶的摇床烘焙结构测定
Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9284-9. doi: 10.1073/pnas.95.16.9284.
9
Structure solution by minimal-function phase refinement and Fourier filtering. II. Implementation and applications.
Acta Crystallogr A. 1994 Mar 1;50 ( Pt 2):210-20. doi: 10.1107/s0108767393008992.
10
Phasing methods for protein crystallography.蛋白质晶体学的相位法
Curr Opin Struct Biol. 1997 Oct;7(5):672-80. doi: 10.1016/s0959-440x(97)80077-2.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验