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非共价酶-底物相互作用在来自嗜纤维单胞菌的纤维二糖磷酸化酶催化反应中的作用

Role of non-covalent enzyme-substrate interactions in the reaction catalysed by cellobiose phosphorylase from Cellulomonas uda.

作者信息

Nidetzky B, Eis C, Albert M

机构信息

Institute of Food Technology, University of Agricultural Sciences (BOKU), Muthgasse 18, A-1190 Vienna, Austria.

出版信息

Biochem J. 2000 Nov 1;351 Pt 3(Pt 3):649-59.

Abstract

Steady-state kinetic studies of the enzymic glucosyl transfer to and from phosphate catalysed by cellobiose phosphorylase from Cellulomonas uda have shown that this enzyme operates by a ternary-complex kinetic mechanism in which beta-cellobiose binds before phosphate, and beta-D-glucose and alpha-D-glucopyranosyl phosphate are released in that order. alpha-D-Glucopyranosyl fluoride (but not beta-D-glucopyranosyl fluoride) serves as alternative glucosyl donor for beta-cellobiose synthesis with a specificity constant that is one-ninth that of the corresponding enzymic reaction with alpha-D-glucopyranosyl phosphate (approximately 20000 M(-1).s(-1) at 30 degrees C). The kinetic parameters for a complete series of deoxy and deoxyfluoro analogues of D-glucose have been determined and the data yield estimates of the net strengths of hydrogen-bonding interactions with the non-reacting hydroxy groups of D-glucose at the transition state (0.8-4.0 kcal/mol, where 1 cal identical with 4.184 J) and enable the prediction of the polarities of these hydrogen bonds. Each hydroxy group functions as donor of a hydrogen for bonding to probably a charged (at 3-OH) or neutral (at 2-OH and 6-OH) acceptor group on the enzyme. The equatorial 1-OH is essential for enzyme activity. Derivatives of D-glucose in which the 1-OH or the reacting 4-OH were replaced by hydrogen or fluorine have been tested as inhibitors to measure their affinities for the sugar-binding subsite +1 (numbered from the bond-cleaving/forming site). The data show that hydrogen-bonding interactions between the 1-OH and 4-OH and charged groups on the enzyme stabilize the ground-state ternary complex of the enzymic synthesis of beta-cellobiose by 2.3 and 0.4 kcal/mol, respectively, and assist the precise positioning of beta-D-glucose for catalysis.

摘要

对来自 uda 纤维单胞菌的纤维二糖磷酸化酶催化的磷酸与纤维二糖之间的糖基转移进行的稳态动力学研究表明,该酶通过三元复合物动力学机制起作用,其中β-纤维二糖在磷酸盐之前结合,β-D-葡萄糖和α-D-吡喃葡萄糖基磷酸按该顺序释放。α-D-吡喃葡萄糖基氟化物(但不是β-D-吡喃葡萄糖基氟化物)作为β-纤维二糖合成的替代糖基供体,其特异性常数是与α-D-吡喃葡萄糖基磷酸相应酶促反应的九分之一(在 30℃时约为 20000 M⁻¹·s⁻¹)。已经确定了一系列 D-葡萄糖的脱氧和脱氧氟类似物的动力学参数,这些数据得出了在过渡态与 D-葡萄糖的非反应性羟基的氢键相互作用的净强度估计值(0.8 - 4.0 kcal/mol,其中 1 cal 等同于 4.184 J),并能够预测这些氢键的极性。每个羟基作为氢供体,可能与酶上带电荷的(在 3-OH 处)或中性的(在 2-OH 和 6-OH 处)受体基团形成氢键。赤道面的 1-OH 对酶活性至关重要。已测试将 1-OH 或反应性 4-OH 被氢或氟取代的 D-葡萄糖衍生物作为抑制剂,以测量它们对糖结合亚位点 +1(从键断裂/形成位点编号)的亲和力。数据表明,1-OH 和 4-OH 与酶上带电荷基团之间的氢键相互作用分别使β-纤维二糖酶促合成的基态三元复合物稳定 2.3 和 0.4 kcal/mol,并有助于β-D-葡萄糖精确定位以进行催化。

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本文引用的文献

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Mutagenesis of glycosidases.糖苷酶的诱变
Annu Rev Biochem. 1999;68:487-522. doi: 10.1146/annurev.biochem.68.1.487.
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Rethinking fundamentals of enzyme action.重新思考酶作用的基本原理。
Adv Enzymol Relat Areas Mol Biol. 1999;73:25-55, ix. doi: 10.1002/9780470123195.ch2.
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The low barrier hydrogen bond in enzymatic catalysis.酶催化中的低势垒氢键
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