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压力对甲酸脱氢酶氘同位素效应的影响。

Effect of pressure on deuterium isotope effects of formate dehydrogenase.

作者信息

Quirk D J, Northrop D B

机构信息

Division of Pharmaceutical Sciences, School of Pharmacy, 425 North Charter Street, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.

出版信息

Biochemistry. 2001 Jan 23;40(3):847-51. doi: 10.1021/bi001991w.

Abstract

High pressure causes biphasic effects on the oxidation of formate by yeast formate dehydrogenase as expressed on the kinetic parameter V/K, which measures substrate capture. Moderate pressure increases capture by accelerating hydride transfer. The transition state for hydride transfer has a smaller volume than the free formate plus the capturing form of enzyme, with DeltaV(double dagger) = -9.7 +/- 1.0 mL/mol. Pressures above 1.5 kbar decrease capture, reminiscent of effects on the conformational change associated with the binding of nicotinamide adenine dinucleotide (NAD(+)) to yeast alcohol dehydrogenase [Northrop, D. B., and Y. K. Cho (2000) Biochemistry 39, 2406-2412]. The collision complex, E-NAD(+), has a smaller volume than the more tightly bound reactant-state complex, E-NAD(+), with DeltaV = +83.4 +/- 5.2 mL/mol. A comparison of the effects of pressure on the oxidation of normal and deuteroformate shows that the entire isotope effect on hydride transfer, 2.73 +/- 0.20, arises solely from transition-state phenomena, as was also observed previously with yeast alcohol dehydrogense. In contrast, normal primary isotope effects arise solely from different zero-point energies in reactant states, and those that express hydrogen tunneling arise from a mixture of both reactant-state and transition-state phenomena. Moreover, pressure increases the primary intrinsic deuterium isotope effect, the opposite of what was observed with yeast alcohol dehydrogense. The lack of a decrease in the isotope effect is also contrary to empirical precedents from chemical reactions suspected of tunneling and to theoretical constructs of vibrationally enhanced tunneling in enzymatic reactions. Hence, this new experimental design penetrates transition states of enzymatic catalysis as never before, reveals the presence of phenomena foreign to chemical kinetics, and calls for explanations of how enzymes work beyond the tenants of physical organic chemistry.

摘要

高压对酵母甲酸脱氢酶催化甲酸氧化反应的动力学参数V/K产生双相效应,V/K衡量底物捕获能力。适度压力通过加速氢化物转移来增强捕获能力。氢化物转移的过渡态体积比游离甲酸与酶的捕获形式之和小,ΔV‡ = -9.7 ± 1.0 mL/mol。1.5 kbar以上的压力会降低捕获能力,这与压力对烟酰胺腺嘌呤二核苷酸(NAD(+))与酵母乙醇脱氢酶结合相关构象变化的影响类似[Northrop, D. B., and Y. K. Cho (2000) Biochemistry 39, 2406 - 2412]。碰撞复合物E-NAD(+)的体积比结合更紧密的反应物态复合物E-NAD(+)小,ΔV = +83.4 ± 5.2 mL/mol。压力对正常甲酸和氘代甲酸氧化反应影响的比较表明,氢化物转移的整个同位素效应2.73 ± 0.20完全源于过渡态现象,这与之前在酵母乙醇脱氢酶中观察到的情况相同。相比之下,正常的一级同位素效应仅源于反应物态不同的零点能,而表现出氢隧穿的同位素效应则源于反应物态和过渡态现象的混合。此外,压力增加了一级本征氘同位素效应,这与在酵母乙醇脱氢酶中观察到的情况相反。同位素效应没有降低也与怀疑存在隧穿的化学反应的经验先例以及酶促反应中振动增强隧穿的理论构想相悖。因此,这种新的实验设计以前所未有的方式深入研究了酶催化的过渡态,揭示了化学动力学中不存在的现象,并需要对酶如何工作做出超越物理有机化学范畴的解释。

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