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关于密码子诱导的涉及46位7-甲基鸟苷残基的赖氨酸转运RNA(tRNALys)变构变化的化学证据。

Chemical evidence for a codon-induced allosteric change in tRNALys involving the 7-methylguanosine residue 46.

作者信息

Wagner R, Garrett R A

出版信息

Eur J Biochem. 1979 Jul;97(2):615-21. doi: 10.1111/j.1432-1033.1979.tb13151.x.

DOI:10.1111/j.1432-1033.1979.tb13151.x
PMID:111928
Abstract

[32P]TRNALys, from Escherichia coli, was modified with kethoxal, in the presence and absence of the oligonucleotide codon (A)4. The presence of the codon resulted in a faster modification rate of the tRNA at three guanine sites which were identified by a diagonal fingerprint method. A large increase in the modification rate occurred at the 7-methylguanosine residue 46 (m7G-46) in the presence of the codon: weakly enhanced modification was observed at G-15 and G-57. It is concluded that the formation of a codon-anticodon complex induces, primarily, a conformational change involving disruption of the m7G-46 from the m7G-46 . G-22 . C-13 base triple. Subsequently, the guanines of G-15 and G-57, in the D and T loops, respectively, become slightly more reactive, suggesting a weak tendency for these two interacting arms to unfold. The results are interpreted in terms of an equilibrium between two main conformers, and a third minor one; the possible significance of these conformers in protein biosynthesis, is considered.

摘要

来自大肠杆菌的[32P]赖氨酸转运核糖核酸(tRNALys)在有和没有寡核苷酸密码子(A)4的情况下用乙二醛进行修饰。密码子的存在导致通过对角线指纹法鉴定的三个鸟嘌呤位点处tRNA的修饰速率加快。在密码子存在的情况下,46位的7-甲基鸟苷残基(m7G-46)的修饰速率大幅增加:在G-15和G-57处观察到修饰略有增强。结论是密码子-反密码子复合物的形成主要诱导了一种构象变化,涉及m7G-46与m7G-46.G-22.C-13碱基三联体的破坏。随后,分别位于D环和T环中的G-15和G-57的鸟嘌呤变得略微更具反应性,表明这两个相互作用臂有轻微的展开倾向。结果根据两个主要构象异构体和第三个次要构象异构体之间的平衡进行解释;考虑了这些构象异构体在蛋白质生物合成中的可能意义。

相似文献

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Chemical evidence for a codon-induced allosteric change in tRNALys involving the 7-methylguanosine residue 46.关于密码子诱导的涉及46位7-甲基鸟苷残基的赖氨酸转运RNA(tRNALys)变构变化的化学证据。
Eur J Biochem. 1979 Jul;97(2):615-21. doi: 10.1111/j.1432-1033.1979.tb13151.x.
2
Evidence from ultraviolet absorbance measurements for a codon-induced conformational change in lysine tRNA from Escherichia coli.来自紫外线吸光度测量的证据表明,大肠杆菌赖氨酸转运核糖核酸(tRNA)中存在密码子诱导的构象变化。
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Codon:anticodon and anticodon:anticodon interaction: evaluation of equilibrium and kinetic parameters of complexes involving a g:u wobble.密码子:反密码子和反密码子:反密码子相互作用:涉及G:U摆动的复合物平衡和动力学参数的评估
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Allosteric mechanism for codon-dependent tRNA selection on ribosomes.核糖体上密码子依赖性tRNA选择的变构机制。
Proc Natl Acad Sci U S A. 1975 Nov;72(11):4248-51. doi: 10.1073/pnas.72.11.4248.

引用本文的文献

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A base substitution in the amino acid acceptor stem of tRNA(Lys) causes both misacylation and altered decoding.tRNA(赖氨酸)氨基酸接受茎中的碱基替换会导致错误酰化和解码改变。
Gene Expr. 1996;6(2):101-12.
2
Conserved 5S rRNA complement to tRNA is not required for protein synthesis.蛋白质合成不需要与tRNA互补的保守5S rRNA。
Proc Natl Acad Sci U S A. 1982 Jan;79(1):36-40. doi: 10.1073/pnas.79.1.36.
3
Structural variability of tRNA: small-angle x-ray scattering of the yeast tRNAphe-Escherichia coli tRNAGlu2 complex.转运RNA的结构变异性:酵母苯丙氨酸转运RNA-大肠杆菌谷氨酸转运RNA2复合物的小角X射线散射
Proc Natl Acad Sci U S A. 1982 Oct;79(19):5891-5. doi: 10.1073/pnas.79.19.5891.
4
Structural investigation of Phe-tRNAPhe from E.coli bound to the ribosomal A-site.对来自大肠杆菌且与核糖体A位点结合的苯丙氨酰转运核糖核酸(Phe-tRNAPhe)的结构研究。
Nucleic Acids Res. 1983 Feb 11;11(3):575-89. doi: 10.1093/nar/11.3.575.
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Fluorescence modification of Escherichia coli 5S RNA.大肠杆菌5S核糖核酸的荧光修饰
Nucleic Acids Res. 1981 Jul 10;9(13):3187-98. doi: 10.1093/nar/9.13.3187.
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Chemical probing of the tRNA--ribosome complex.tRNA-核糖体复合物的化学探测
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2273-7. doi: 10.1073/pnas.78.4.2273.
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Mechanism of codon recognition by transfer RNA studied with oligonucleotides larger than triplets.用大于三联体的寡核苷酸研究转运RNA的密码子识别机制。
Nucleic Acids Res. 1985 May 24;13(10):3667-83. doi: 10.1093/nar/13.10.3667.
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Fluorine-19 nuclear magnetic resonance study of codon-anticodon interaction in 5-fluorouracil-substituted E. coli transfer RNAs.5-氟尿嘧啶取代的大肠杆菌转移核糖核酸中密码子-反密码子相互作用的氟-19核磁共振研究。
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Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition.反密码子-反密码子相互作用诱导tRNA构象变化:酵母天冬氨酸tRNA,tRNA- mRNA识别的一个模型。
Proc Natl Acad Sci U S A. 1986 Feb;83(4):932-6. doi: 10.1073/pnas.83.4.932.