通过数据挖掘发现一种新型小鼠C型逆转录病毒。
Discovery of a novel murine type C retrovirus by data mining.
作者信息
Bromham L, Clark F, McKee J J
机构信息
Department of Zoology, University of Queensland, Brisbane 4072, Australia.
出版信息
J Virol. 2001 Mar;75(6):3053-7. doi: 10.1128/JVI.75.6.3053-3057.2001.
Abstract
Analysis of genomic and expression data allows both identification and characterization of novel retroviruses. We describe a recombinant type C murine retrovirus, similar to the Mus dunni endogenous retrovirus, with VL30-like long terminal repeats and murine leukemia virus-like coding sequences. This virus is present in multiple copies in the mouse genome and expressed in a range of mouse tissues.
摘要
对基因组和表达数据的分析有助于新型逆转录病毒的鉴定和特征描述。我们描述了一种重组C型鼠逆转录病毒，类似于邓氏小鼠内源性逆转录病毒，具有VL30样长末端重复序列和鼠白血病病毒样编码序列。这种病毒在小鼠基因组中以多拷贝形式存在，并在一系列小鼠组织中表达。
相似文献
1
Discovery of a novel murine type C retrovirus by data mining.通过数据挖掘发现一种新型小鼠C型逆转录病毒。
J Virol. 2001 Mar;75(6):3053-7. doi: 10.1128/JVI.75.6.3053-3057.2001.
2
Molecular characterization of the recent intragenomic spread of the murine endogenous retrovirus MuERV-L.小鼠内源性逆转录病毒MuERV-L近期在基因组内传播的分子特征
J Mol Evol. 2003 Feb;56(2):181-6. doi: 10.1007/s00239-002-2392-3.
3
Phylogenetic relationship of porcine endogenous retrovirus (PERV) in Chinese pigs with some type C retroviruses.中国猪体内猪内源性逆转录病毒（PERV）与某些C型逆转录病毒的系统发育关系。
Virus Res. 2004 Oct;105(2):167-73. doi: 10.1016/j.virusres.2004.05.007.
4
Molecular characterization of full-length MLV-related endogenous retrovirus ChiRV1 from the chicken, Gallus gallus.来自家鸡（Gallus gallus）的全长禽白血病病毒相关内源性逆转录病毒ChiRV1的分子特征分析
Virology. 2008 Jun 20;376(1):199-204. doi: 10.1016/j.virol.2008.03.006. Epub 2008 Apr 25.
5
In vitro characterization of a koala retrovirus.考拉逆转录病毒的体外特性研究
J Virol. 2006 Mar;80(6):3104-7. doi: 10.1128/JVI.80.6.3104-3107.2006.
6
Sequence comparison of JSRV with endogenous proviruses: envelope genotypes and a novel ORF with similarity to a G-protein-coupled receptor.绵羊肺腺瘤病毒与内源性前病毒的序列比较：包膜基因型及与G蛋白偶联受体相似的一个新开放阅读框
Virology. 1999 Jun 5;258(2):333-43. doi: 10.1006/viro.1999.9728.
7
Identification of endogenous retroviral sequences based on modular organization: proviral structure at the SSAV1 locus.基于模块化组织鉴定内源性逆转录病毒序列：SSAV1基因座处的前病毒结构
Genomics. 1997 Jul 1;43(1):52-61. doi: 10.1006/geno.1997.4790.
8
Human endogenous retrovirus family HERV-K(HML-5): status, evolution, and reconstruction of an ancient betaretrovirus in the human genome.人类内源性逆转录病毒家族HERV-K(HML-5)：人类基因组中一种古老β逆转录病毒的现状、进化与重建
J Virol. 2004 Aug;78(16):8788-98. doi: 10.1128/JVI.78.16.8788-8798.2004.
9
Identification and classification of endogenous retroviruses in the canine genome using degenerative PCR and in-silico data analysis.利用退化 PCR 和计算机数据分析鉴定和分类犬基因组中的内源性逆转录病毒。
Virology. 2012 Jan 20;422(2):195-204. doi: 10.1016/j.virol.2011.10.010. Epub 2011 Nov 14.
10
Evolution and characterization of tetraonine endogenous retrovirus: a new virus related to avian sarcoma and leukosis viruses.四碱基内源性逆转录病毒的进化与特性：一种与禽肉瘤和白血病病毒相关的新病毒
J Virol. 2001 Feb;75(4):2002-9. doi: 10.1128/JVI.75.4.2002-2009.2001.
引用本文的文献
1
Nested retrotransposition in the East Asian mouse genome causes the classical mutation.东亚鼠基因组中的套式反转录转座导致了经典突变。
Commun Biol. 2019 Aug 2;2:283. doi: 10.1038/s42003-019-0539-7. eCollection 2019.
2
Transmission, Evolution, and Endogenization: Lessons Learned from Recent Retroviral Invasions.传播、进化和内源性化：从最近的逆转录病毒入侵中吸取的教训。
Microbiol Mol Biol Rev. 2017 Dec 13;82(1). doi: 10.1128/MMBR.00044-17. Print 2018 Mar.
3
Transspecies Transmission of Gammaretroviruses and the Origin of the Gibbon Ape Leukaemia Virus (GaLV) and the Koala Retrovirus (KoRV).γ逆转录病毒的跨物种传播以及长臂猿白血病病毒（GaLV）和考拉逆转录病毒（KoRV）的起源
Viruses. 2016 Dec 20;8(12):336. doi: 10.3390/v8120336.
4
Endogenous Gibbon Ape Leukemia Virus Identified in a Rodent (Melomys burtoni subsp.) from Wallacea (Indonesia).在来自华莱士群岛（印度尼西亚）的一种啮齿动物（伯氏长吻袋貂亚种）中发现内源性长臂猿白血病病毒。
J Virol. 2016 Aug 26;90(18):8169-80. doi: 10.1128/JVI.00723-16. Print 2016 Sep 15.
5
Identification of a group of Mus dunni endogenous virus-like endogenous retroviruses from the C57BL/6J mouse genome: proviral genomes, strain distribution, expression characteristics, and genomic integration profile.从 C57BL/6J 鼠基因组中鉴定出一群 Mus dunni 内源性病毒样内源性逆转录病毒：前病毒基因组、株分布、表达特征和基因组整合图谱。
Chromosome Res. 2012 Oct;20(7):859-74. doi: 10.1007/s10577-012-9322-z. Epub 2012 Nov 30.
6
Resurrection of endogenous retroviruses in antibody-deficient mice.抗体缺陷小鼠内源性逆转录病毒的复活。
Nature. 2012 Nov 29;491(7426):774-8. doi: 10.1038/nature11599. Epub 2012 Oct 24.
7
Phylogeny-directed search for murine leukemia virus-like retroviruses in vertebrate genomes and in patients suffering from myalgic encephalomyelitis/chronic fatigue syndrome and prostate cancer.在脊椎动物基因组以及患有肌痛性脑脊髓炎/慢性疲劳综合征和前列腺癌的患者中，基于系统发育学对鼠白血病病毒样逆转录病毒进行搜索。
Adv Virol. 2011;2011:341294. doi: 10.1155/2011/341294. Epub 2011 Sep 4.
8
Murine gammaretrovirus group G3 was not found in Swedish patients with myalgic encephalomyelitis/chronic fatigue syndrome and fibromyalgia.在瑞典患有肌痛性脑脊髓炎/慢性疲劳综合征和纤维肌痛的患者中未发现鼠γ逆转录病毒群 G3。
PLoS One. 2011;6(10):e24602. doi: 10.1371/journal.pone.0024602. Epub 2011 Oct 12.
9
Human RNA "rumor" viruses: the search for novel human retroviruses in chronic disease.人类RNA“谣言”病毒：在慢性疾病中寻找新型人类逆转录病毒
Microbiol Mol Biol Rev. 2008 Mar;72(1):157-96, table of contents. doi: 10.1128/MMBR.00033-07.
10
The GLN family of murine endogenous retroviruses contains an element competent for infectious viral particle formation.小鼠内源性逆转录病毒的GLN家族包含一种能够形成传染性病毒颗粒的元件。
J Virol. 2008 May;82(9):4413-9. doi: 10.1128/JVI.02141-07. Epub 2008 Feb 20.
本文引用的文献
1
The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: a novel type C endogenous virus related to Gibbon ape leukemia virus.考拉（树袋熊）逆转录病毒的核苷酸序列：一种与长臂猿白血病病毒相关的新型C型内源性病毒。
J Virol. 2000 May;74(9):4264-72. doi: 10.1128/jvi.74.9.4264-4272.2000.
2
Replication of Mus dunni endogenous retrovirus depends on promoter activation followed by enhancer multimerization.邓氏小鼠内源性逆转录病毒的复制依赖于启动子激活，随后是增强子多聚化。
J Virol. 1999 Dec;73(12):9803-9. doi: 10.1128/JVI.73.12.9803-9809.1999.
3
Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3).内源性逆转录病毒为两个新的人类基因（HHLA2和HHLA3）提供主要的聚腺苷酸化信号。
Genomics. 1999 Aug 1;59(3):255-63. doi: 10.1006/geno.1999.5877.
4
Sequence analysis of Mus dunni endogenous virus reveals a hybrid VL30/gibbon ape leukemia virus-like structure and a distinct envelope.小家鼠内源性病毒的序列分析揭示了一种VL30/长臂猿白血病病毒样的混合结构以及一种独特的包膜。
J Virol. 1998 Sep;72(9):7459-66. doi: 10.1128/JVI.72.9.7459-7466.1998.
5
Characterization of a C-type retrovirus isolated from an HIV infected cell line: complete nucleotide sequence.
Arch Virol. 1998;143(6):1077-92. doi: 10.1007/s007050050357.
6
Structure and functional properties of mouse VL30 retrotransposons.小鼠VL30逆转录转座子的结构与功能特性
Biochim Biophys Acta. 1997 May 2;1352(1):33-47. doi: 10.1016/s0167-4781(97)00009-2.
7
A nonstructural gag-encoded glycoprotein precursor is necessary for efficient spreading and pathogenesis of murine leukemia viruses.一种非结构的gag编码糖蛋白前体对于鼠白血病病毒的有效传播和发病机制是必需的。
J Virol. 1994 Jun;68(6):3857-67. doi: 10.1128/JVI.68.6.3857-3867.1994.
8
Use of a mammalian interspersed repetitive (MIR) element in the coding and processing sequences of mammalian genes.哺乳动物散布重复（MIR）元件在哺乳动物基因编码和加工序列中的应用。
Nucleic Acids Res. 1995 Aug 11;23(15):2837-9. doi: 10.1093/nar/23.15.2837.
9
Basic local alignment search tool.基本局部比对搜索工具
J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2.
10
Mouse retrotransposons: a cellular reservoir of long terminal repeat (LTR) elements with diverse transcriptional specificities.小鼠逆转座子：具有多样转录特异性的长末端重复（LTR）元件的细胞储存库。
Adv Cancer Res. 1991;56:215-51. doi: 10.1016/s0065-230x(08)60482-0.
Zotero 插件