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通过递归剪接将酵母内含子识别与转录解偶联。

Uncoupling yeast intron recognition from transcription with recursive splicing.

作者信息

Lopez P J, Séraphin B

机构信息

EMBL, Heidelberg, Germany.

出版信息

EMBO Rep. 2000 Oct;1(4):334-9. doi: 10.1093/embo-reports/kvd065.

DOI:10.1093/embo-reports/kvd065
PMID:11269499
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1083742/
Abstract

Pre-mRNA splicing has to be coordinated with other processes occurring in the nucleus including transcription, mRNA 3' end formation and mRNA export. To analyze the relationship between transcription and splicing, we constructed a network of nested introns. Introns were inserted in the 5' splice site and/or branchpoint of a synthetic yeast intron interrupting a reporter gene. The inserted introns mask the recipient intron from the cellular machinery until they are removed by splicing. Production of functional mRNA from these constructs therefore requires recognition of a spliced RNA as a splicing substrate. We show that recurrent splicing occurs in a sequential and ordered fashion in vivo. Thus, in Saccharomyces cerevisiae, intron recognition and pre-spliceosome assembly is not tightly coupled to transcription.

摘要

前体mRNA剪接必须与细胞核中发生的其他过程协调进行,包括转录、mRNA 3' 末端形成和mRNA输出。为了分析转录与剪接之间的关系,我们构建了一个嵌套内含子网络。将内含子插入到一个中断报告基因的合成酵母内含子的5' 剪接位点和/或分支点。插入的内含子会将受体内含子屏蔽起来,使其无法被细胞机制识别,直到它们通过剪接被去除。因此,从这些构建体产生功能性mRNA需要将剪接后的RNA识别为剪接底物。我们表明,重复剪接在体内以连续且有序的方式发生。因此,在酿酒酵母中,内含子识别和剪接体前体组装与转录并非紧密耦合。

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Uncoupling yeast intron recognition from transcription with recursive splicing.通过递归剪接将酵母内含子识别与转录解偶联。
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本文引用的文献

1
RNA polymerase II and the integration of nuclear events.RNA聚合酶II与核内事件的整合
Genes Dev. 2000 Jun 15;14(12):1415-29.
2
Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice-site recognition.酵母前体mRNA剪接的基因组规模定量分析:对剪接位点识别的影响
RNA. 1999 Sep;5(9):1135-7. doi: 10.1017/s135583829999091x.
3
Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer.转录与可变剪接的偶联:RNA聚合酶II启动子调节SF2/ASF和9G8对一个外显子剪接增强子的作用。
Mol Cell. 1999 Aug;4(2):251-8. doi: 10.1016/s1097-2765(00)80372-x.
4
A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor.一种影响前体mRNA剪接和核内前体mRNA滞留的条件性U5小核RNA突变将SSD1/SRK1鉴定为一种普遍的剪接突变体抑制因子。
Nucleic Acids Res. 1999 Sep 1;27(17):3455-65. doi: 10.1093/nar/27.17.3455.
5
Coupling RNA polymerase II transcription with pre-mRNA processing.将RNA聚合酶II转录与前体mRNA加工相偶联。
Curr Opin Cell Biol. 1999 Jun;11(3):347-51. doi: 10.1016/S0955-0674(99)80048-9.
6
Nuclear organization of pre-mRNA splicing factors.前体mRNA剪接因子的核组织
Curr Opin Cell Biol. 1999 Jun;11(3):372-7. doi: 10.1016/S0955-0674(99)80052-0.
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8
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9
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