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基于26S核糖体DNA序列的山茱萸属(山茱萸科)系统发育关系

Phylogenetic relationships within Cornus (Cornaceae) based on 26S rDNA sequences.

作者信息

Fan C

机构信息

Department of Biological Sciences, Idaho State University, Pocatello, Idaho 83209-8007 USA.

出版信息

Am J Bot. 2001 Jun;88(6):1131-8.

Abstract

Phylogenetic relationships within the dogwood genus Cornus have been highly controversial due to the great morphological heterogeneity. Earlier phylogenetic analyses of Cornus using chloroplast DNA (cpDNA) data (including rbcL and matK sequences, as well as restriction sites) and morphological characters suggested incongruent relationships within the genus. The present study generated sequence data from the nuclear gene 26S rDNA for Cornus to test the phylogenetic hypotheses based on cpDNA and morphological data. The 26S rDNA sequence data obtained represent 16 species, 13 from Cornus and three from outgroups, having an aligned length of 3380 bp. Both parsimony and maximum likelihood analyses of these sequences were conducted. Trees resulting from these analyses suggest relationships among subgroups of Cornus consistent with those inferred from cpDNA data. That is, the dwarf dogwood (subg. Arctocrania) and the big-bracted dogwood (subg. Cynoxylon and subg. Syncarpea) clades are sisters, which are, in turn, sister to the cornelian cherries (subg. Cornus and subg. Afrocrania). This red-fruited clade is sister to the blue- or white-fruited dogwoods (subg. Mesomora, subg. Kraniopsis, and subg. Yinquania). Within the blue- or white-fruited clade, C. oblonga (subg. Yinquania) is sister to the remainder, and subg. Mesomora is sister to subg. Kraniopsis. These relationships were also suggested by the combined 26S rDNA and cpDNA data, but with higher bootstrap and Bremer support in the combined analysis. The 26S rDNA sequence data of Cornus consist of 12 expansion segments spanning 1034 bp. These expansion segments evolve approximately four times as fast as the conserved core regions. The study provides an example of phylogenetic utility of 26S rDNA sequences below the genus level.

摘要

由于山茱萸属植物在形态上具有高度的异质性,其系统发育关系一直存在很大争议。早期利用叶绿体DNA(cpDNA)数据(包括rbcL和matK序列以及限制性位点)和形态特征对山茱萸属进行的系统发育分析表明,该属内的关系并不一致。本研究从山茱萸属的核基因26S rDNA生成序列数据,以检验基于cpDNA和形态数据的系统发育假说。获得的26S rDNA序列数据代表16个物种,其中13个来自山茱萸属,3个来自外类群,比对长度为3380 bp。对这些序列进行了简约分析和最大似然分析。这些分析得到的树状图表明,山茱萸属亚组之间的关系与从cpDNA数据推断的关系一致。也就是说,矮山茱萸(Arctocrania亚组)和大苞片山茱萸(Cynoxylon亚组和Syncarpea亚组)分支是姐妹分支,它们又依次是欧亚山茱萸(Cornus亚组和Afrocrania亚组)的姐妹分支。这个红色果实分支是蓝色或白色果实山茱萸(Mesomora亚组、Kraniopsis亚组和Yinquania亚组)的姐妹分支。在蓝色或白色果实分支内,长圆叶山茱萸(Yinquania亚组)是其余分支的姐妹分支,Mesomora亚组是Kraniopsis亚组的姐妹分支。26S rDNA和cpDNA的联合数据也表明了这些关系,但在联合分析中具有更高的自展值和Bremer支持率。山茱萸属的26S rDNA序列数据由12个扩展片段组成,跨度为1034 bp。这些扩展片段的进化速度大约是保守核心区域的四倍。该研究提供了一个在属以下水平上26S rDNA序列系统发育效用的例子。

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