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Proteomics. Integrating interactomes.

作者信息

Gerstein Mark, Lan Ning, Jansen Ronald

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.

出版信息

Science. 2002 Jan 11;295(5553):284-7. doi: 10.1126/science.1068664.

DOI:10.1126/science.1068664

PMID:11786630

Abstract

摘要

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Proteomics. Integrating interactomes.

作者信息

Gerstein Mark, Lan Ning, Jansen Ronald

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.

出版信息

Science. 2002 Jan 11;295(5553):284-7. doi: 10.1126/science.1068664.

DOI:10.1126/science.1068664

PMID:11786630

Abstract

摘要

相似文献

Proteomics. Integrating interactomes.

Science. 2002 Jan 11;295(5553):284-7. doi: 10.1126/science.1068664.

Proteomics in a small world.

Nat Struct Biol. 2002 Mar;9(3):153. doi: 10.1038/nsb0302-153.

Does mapping reveal correlation between gene expression and protein-protein interaction?

Nat Genet. 2003 Jan;33(1):15-6; author reply 16-7. doi: 10.1038/ng0103-15.

[Decade of genomics--methods for genome investigation in yeast Saccharomyces cerevisiae].

Postepy Biochem. 2006;52(4):435-47.

Functional analysis of the yeast genome.

Funct Integr Genomics. 2000 Sep;1(2):99-113. doi: 10.1007/s101420000012.

Integrating functional genomics data.

Methods Mol Biol. 2008;453:267-78. doi: 10.1007/978-1-60327-429-6_14.

Playing tag with the yeast proteome.

Nat Biotechnol. 2003 Nov;21(11):1297-9. doi: 10.1038/nbt1103-1297.

Proteomics: where's Waldo in yeast?

Nature. 2003 Oct 16;425(6959):671-2. doi: 10.1038/425671a.

A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.

BMC Bioinformatics. 2004 Oct 25;5:158. doi: 10.1186/1471-2105-5-158.

CYGD: the Comprehensive Yeast Genome Database.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D364-8. doi: 10.1093/nar/gki053.

引用本文的文献

Genome-wide functional association networks: background, data & state-of-the-art resources.

Brief Bioinform. 2020 Jul 15;21(4):1224-1237. doi: 10.1093/bib/bbz064.

Quantitative Determination of Interacting Protein Surfaces in Prokaryotes and Eukaryotes by Using In-Cell NMR Spectroscopy.

Methods Mol Biol. 2018;1688:423-444. doi: 10.1007/978-1-4939-7386-6_20.

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework.

Database (Oxford). 2016 Mar 17;2016. doi: 10.1093/database/baw009. Print 2016.

A fast topological analysis algorithm for large-scale similarity evaluations of ligands and binding pockets.

J Cheminform. 2015 Aug 20;7:42. doi: 10.1186/s13321-015-0091-5. eCollection 2015.

Integration strategy is a key step in network-based analysis and dramatically affects network topological properties and inferring outcomes.

Biomed Res Int. 2014;2014:296349. doi: 10.1155/2014/296349. Epub 2014 Aug 27.

PLoS One. 2014 Jun 20;9(6):e100385. doi: 10.1371/journal.pone.0100385. eCollection 2014.

FunCoup 3.0: database of genome-wide functional coupling networks.

Nucleic Acids Res. 2014 Jan;42(Database issue):D380-8. doi: 10.1093/nar/gkt984. Epub 2013 Oct 31.

Disease embryo development network reveals the relationship between disease genes and embryo development genes.

J Theor Biol. 2011 Oct 21;287:100-8. doi: 10.1016/j.jtbi.2011.07.018. Epub 2011 Aug 3.

Combinations of protein-chemical complex structures reveal new targets for established drugs.

PLoS Comput Biol. 2011 May;7(5):e1002043. doi: 10.1371/journal.pcbi.1002043. Epub 2011 May 5.

TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery.

PLoS One. 2011 Mar 8;6(3):e17844. doi: 10.1371/journal.pone.0017844.