Wipf Daniel, Ludewig Uwe, Tegeder Mechthild, Rentsch Doris, Koch Wolfgang, Frommer Wolf B
ZMBP, Plant Physiology, Auf der Morgenstelle 1, Eberhard-Karls-Universität Tübingen, D-72076, Tübingen, Germany.
Trends Biochem Sci. 2002 Mar;27(3):139-47. doi: 10.1016/s0968-0004(01)02054-0.
When comparing the transporters of three completely sequenced eukaryotic genomes--Saccharomyces cerevisiae, Arabidopsis thaliana and Homo sapiens--transporter types can be distinguished according to phylogeny, substrate spectrum, transport mechanism and cell specificity. The known amino acid transporters belong to five different superfamilies. Two preferentially Na(+)-coupled transporter superfamilies are not represented in the yeast and Arabidopsis genomes, whereas the other three groups, which often function as H(+)-coupled systems, have members in all investigated genomes. Additional superfamilies exist for organellar transport, including mitochondrial and plastidic carriers. When used in combination with phylogenetic analyses, functional comparison might aid our prediction of physiological functions for related but uncharacterized open reading frames.
在比较三个全序列测定的真核生物基因组(酿酒酵母、拟南芥和人类)的转运蛋白时,可根据系统发育、底物谱、转运机制和细胞特异性来区分转运蛋白类型。已知的氨基酸转运蛋白属于五个不同的超家族。酵母和拟南芥基因组中没有两个优先与Na⁺偶联的转运蛋白超家族,而其他三个通常作为H⁺偶联系统发挥作用的组在所有研究的基因组中都有成员。还存在用于细胞器转运的其他超家族,包括线粒体和质体载体。当与系统发育分析结合使用时,功能比较可能有助于我们预测相关但未表征的开放阅读框的生理功能。