Knapp Michael J, Rickert Keith, Klinman Judith P
Department of Chemistry, University of California, Berkeley, California 94720, USA.
J Am Chem Soc. 2002 Apr 17;124(15):3865-74. doi: 10.1021/ja012205t.
The hydrogen-atom transfer in soybean lipoxygenase-1 (SLO) exhibits a large kinetic isotope effect on k(cat) (KIE = 81) near room temperature and a very weak temperature dependence (E(act) = 2.1 kcal/mol). These properties are consistent with H small middle dot transfer that occurs entirely by a tunneling event. Mutants of SLO were prepared, and the temperature dependence of the KIE was measured, to test for alterations in the tunneling behavior. All mutants studied exhibit KIEs of similar, large magnitude at 30 degrees C, despite an up to 3 orders of magnitude change in k(cat). E(act) for two of the mutants (Leu(754) --> Ala, Leu(546) --> Ala) is larger than for wild-type (WT), and the KIE becomes slightly more temperature dependent. In contrast, Ile(553) --> Ala exhibits k(cat) and E(act) parameters similar to wild-type soybean lipoxygenase-1 (WT-SLO) for protiated substrate; however, the KIE is markedly temperature dependent. The behavior of the former two mutants could reflect increased reorganization energies (lambda), but the behavior of the latter mutant is inconsistent with this description. We have invoked a full H* tunneling model (Kuznetsov, A. M.; Ulstrup, J. Can. J. Chem. 1999, 77, 1085-1096) to explain the temperature dependence of the KIE, which is indicative of the extent to which distance sampling (gating) modulates hydrogen transfer. WT-SLO exhibits a very small E(act) and a nearly temperature-independent KIE, which was modeled as arising from a compressed hydrogen transfer distance with little modulation of the hydrogen transfer distance. The observations on the Leu(754) --> Ala and Leu(546) --> Ala mutants were modeled as arising from a slightly less compressed active site with greater modulation of the hydrogen transfer distance by environmental dynamics. Finally, the observed behavior of the Ile(553) --> Ala mutant indicates a relaxed active site with extensive involvement of gating to facilitate hydrogen transfer. We conclude that WT-SLO has an active site structure that is well organized to support hydrogen tunneling and that mutations perturb structural elements that support hydrogen tunneling. Modest alterations in active site residues increase lambda and/or increase the hydrogen transfer distance, thereby affecting the probability that tunneling can occur. These studies allow the detection and characterization of a protein-gating mode in catalysis.
大豆脂氧合酶-1(SLO)中的氢原子转移在室温附近对催化常数(KIE = 81)表现出较大的动力学同位素效应,且温度依赖性非常弱(活化能E(act) = 2.1千卡/摩尔)。这些特性与完全通过隧穿事件发生的氢原子转移相一致。制备了SLO的突变体,并测量了KIE的温度依赖性,以测试隧穿行为的改变。尽管催化常数变化高达3个数量级,但所有研究的突变体在30℃时都表现出相似的、较大幅度的KIE。其中两个突变体(Leu(754)→Ala,Leu(546)→Ala)的活化能E(act)比野生型(WT)更大,并且KIE对温度的依赖性略有增加。相比之下,Ile(553)→Ala对于质子化底物表现出与野生型大豆脂氧合酶-1(WT-SLO)相似的催化常数和活化能参数;然而,KIE对温度有明显的依赖性。前两个突变体的行为可能反映了重组能(λ)增加,但后一个突变体的行为与这种描述不一致。我们采用了一个完整的H*隧穿模型(库兹涅佐夫,A.M.;乌尔斯特鲁普,J.《加拿大化学杂志》1999年,77卷,1085 - 1096页)来解释KIE的温度依赖性,这表明距离采样(门控)调节氢转移的程度。WT-SLO表现出非常小的活化能E(act)和几乎与温度无关的KIE,其模型为源于压缩的氢转移距离,且氢转移距离几乎没有调节。对Leu(754)→Ala和Leu(546)→Ala突变体的观察结果建模为源于活性位点压缩程度稍低,环境动力学对氢转移距离的调节更大。最后,Ile(553)→Ala突变体的观察行为表明活性位点松弛,门控广泛参与以促进氢转移。我们得出结论,WT-SLO具有一个组织良好的活性位点结构来支持氢隧穿,并且突变会扰乱支持氢隧穿的结构元件。活性位点残基的适度改变会增加λ和/或增加氢转移距离,从而影响隧穿发生的概率。这些研究使得能够检测和表征催化过程中的一种蛋白质门控模式。