• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

大豆脂氧合酶-1中温度依赖性同位素效应:将氢隧穿与蛋白质动力学相关联

Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

作者信息

Knapp Michael J, Rickert Keith, Klinman Judith P

机构信息

Department of Chemistry, University of California, Berkeley, California 94720, USA.

出版信息

J Am Chem Soc. 2002 Apr 17;124(15):3865-74. doi: 10.1021/ja012205t.

DOI:10.1021/ja012205t
PMID:11942823
Abstract

The hydrogen-atom transfer in soybean lipoxygenase-1 (SLO) exhibits a large kinetic isotope effect on k(cat) (KIE = 81) near room temperature and a very weak temperature dependence (E(act) = 2.1 kcal/mol). These properties are consistent with H small middle dot transfer that occurs entirely by a tunneling event. Mutants of SLO were prepared, and the temperature dependence of the KIE was measured, to test for alterations in the tunneling behavior. All mutants studied exhibit KIEs of similar, large magnitude at 30 degrees C, despite an up to 3 orders of magnitude change in k(cat). E(act) for two of the mutants (Leu(754) --> Ala, Leu(546) --> Ala) is larger than for wild-type (WT), and the KIE becomes slightly more temperature dependent. In contrast, Ile(553) --> Ala exhibits k(cat) and E(act) parameters similar to wild-type soybean lipoxygenase-1 (WT-SLO) for protiated substrate; however, the KIE is markedly temperature dependent. The behavior of the former two mutants could reflect increased reorganization energies (lambda), but the behavior of the latter mutant is inconsistent with this description. We have invoked a full H* tunneling model (Kuznetsov, A. M.; Ulstrup, J. Can. J. Chem. 1999, 77, 1085-1096) to explain the temperature dependence of the KIE, which is indicative of the extent to which distance sampling (gating) modulates hydrogen transfer. WT-SLO exhibits a very small E(act) and a nearly temperature-independent KIE, which was modeled as arising from a compressed hydrogen transfer distance with little modulation of the hydrogen transfer distance. The observations on the Leu(754) --> Ala and Leu(546) --> Ala mutants were modeled as arising from a slightly less compressed active site with greater modulation of the hydrogen transfer distance by environmental dynamics. Finally, the observed behavior of the Ile(553) --> Ala mutant indicates a relaxed active site with extensive involvement of gating to facilitate hydrogen transfer. We conclude that WT-SLO has an active site structure that is well organized to support hydrogen tunneling and that mutations perturb structural elements that support hydrogen tunneling. Modest alterations in active site residues increase lambda and/or increase the hydrogen transfer distance, thereby affecting the probability that tunneling can occur. These studies allow the detection and characterization of a protein-gating mode in catalysis.

摘要

大豆脂氧合酶-1(SLO)中的氢原子转移在室温附近对催化常数(KIE = 81)表现出较大的动力学同位素效应,且温度依赖性非常弱(活化能E(act) = 2.1千卡/摩尔)。这些特性与完全通过隧穿事件发生的氢原子转移相一致。制备了SLO的突变体,并测量了KIE的温度依赖性,以测试隧穿行为的改变。尽管催化常数变化高达3个数量级,但所有研究的突变体在30℃时都表现出相似的、较大幅度的KIE。其中两个突变体(Leu(754)→Ala,Leu(546)→Ala)的活化能E(act)比野生型(WT)更大,并且KIE对温度的依赖性略有增加。相比之下,Ile(553)→Ala对于质子化底物表现出与野生型大豆脂氧合酶-1(WT-SLO)相似的催化常数和活化能参数;然而,KIE对温度有明显的依赖性。前两个突变体的行为可能反映了重组能(λ)增加,但后一个突变体的行为与这种描述不一致。我们采用了一个完整的H*隧穿模型(库兹涅佐夫,A.M.;乌尔斯特鲁普,J.《加拿大化学杂志》1999年,77卷,1085 - 1096页)来解释KIE的温度依赖性,这表明距离采样(门控)调节氢转移的程度。WT-SLO表现出非常小的活化能E(act)和几乎与温度无关的KIE,其模型为源于压缩的氢转移距离,且氢转移距离几乎没有调节。对Leu(754)→Ala和Leu(546)→Ala突变体的观察结果建模为源于活性位点压缩程度稍低,环境动力学对氢转移距离的调节更大。最后,Ile(553)→Ala突变体的观察行为表明活性位点松弛,门控广泛参与以促进氢转移。我们得出结论,WT-SLO具有一个组织良好的活性位点结构来支持氢隧穿,并且突变会扰乱支持氢隧穿的结构元件。活性位点残基的适度改变会增加λ和/或增加氢转移距离,从而影响隧穿发生的概率。这些研究使得能够检测和表征催化过程中的一种蛋白质门控模式。

相似文献

1
Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.大豆脂氧合酶-1中温度依赖性同位素效应:将氢隧穿与蛋白质动力学相关联
J Am Chem Soc. 2002 Apr 17;124(15):3865-74. doi: 10.1021/ja012205t.
2
Understanding Biological Hydrogen Transfer Through the Lens of Temperature Dependent Kinetic Isotope Effects.理解温度依赖的动力学同位素效应下的生物氢转移。
Acc Chem Res. 2018 Sep 18;51(9):1966-1974. doi: 10.1021/acs.accounts.8b00226. Epub 2018 Aug 28.
3
Enzyme dynamics and tunneling enhanced by compression in the hydrogen abstraction catalyzed by soybean lipoxygenase-1.大豆脂氧合酶-1催化的氢提取反应中,压缩作用增强酶动力学和隧穿效应。
J Phys Chem B. 2006 Dec 7;110(48):24708-19. doi: 10.1021/jp066263i.
4
Modeling temperature dependent kinetic isotope effects for hydrogen transfer in a series of soybean lipoxygenase mutants: The effect of anharmonicity upon transfer distance.模拟一系列大豆脂氧合酶突变体中氢转移的温度依赖性动力学同位素效应:非谐性对转移距离的影响。
Chem Phys. 2005 Dec 7;319(1-3):283-296. doi: 10.1016/j.chemphys.2005.05.017.
5
Active Site Dynamical Effects in the Hydrogen Transfer Rate-limiting Step in the Catalysis of Linoleic Acid by Soybean Lipoxygenase-1 (SLO-1): Primary and Secondary Isotope Contributions.大豆脂氧合酶-1(SLO-1)催化亚油酸过程中氢转移限速步骤的活性位点动力学效应:一级和二级同位素贡献
J Phys Chem B. 2015 Jul 30;119(30):9532-46. doi: 10.1021/acs.jpcb.5b02385. Epub 2015 Jul 14.
6
Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics.环境耦合氢隧穿。将催化与动力学联系起来。
Eur J Biochem. 2002 Jul;269(13):3113-21. doi: 10.1046/j.1432-1033.2002.03022.x.
7
Experimental evidence for hydrogen tunneling when the isotopic arrhenius prefactor (A(H)/A(D)) is unity.当同位素阿仑尼乌斯前因子(A(H)/A(D))为1时氢隧穿的实验证据。
J Am Chem Soc. 2008 Dec 31;130(52):17632-3. doi: 10.1021/ja806354w.
8
Detecting and Characterizing the Kinetic Activation of Thermal Networks in Proteins: Thermal Transfer from a Distal, Solvent-Exposed Loop to the Active Site in Soybean Lipoxygenase.检测和描述蛋白质中热网络的动力学激活:来自大豆脂氧合酶中远端、溶剂暴露环到活性位点的热传递。
J Phys Chem B. 2019 Oct 17;123(41):8662-8674. doi: 10.1021/acs.jpcb.9b07228. Epub 2019 Oct 3.
9
Extremely elevated room-temperature kinetic isotope effects quantify the critical role of barrier width in enzymatic C-H activation.极高的室温动力学同位素效应量化了势垒宽度在酶促C-H活化中的关键作用。
J Am Chem Soc. 2014 Jun 11;136(23):8157-60. doi: 10.1021/ja502726s. Epub 2014 Jun 2.
10
Kinetic investigations of the rate-limiting step in human 12- and 15-lipoxygenase.人12-和15-脂氧合酶限速步骤的动力学研究。
Biochemistry. 2003 May 13;42(18):5236-43. doi: 10.1021/bi0273462.

引用本文的文献

1
Biochemical Consequences of a Leucine-to-Cysteine Clamp Substitution in Lipoxygenases.脂氧合酶中亮氨酸至半胱氨酸钳位取代的生化后果。
Biomolecules. 2025 Aug 11;15(8):1153. doi: 10.3390/biom15081153.
2
Heterobimetallic multi-site concerted proton electron transfer (MS-CPET) promotes coordination-induced O-H bond weakening.异双金属多位协同质子电子转移(MS-CPET)促进配位诱导的O-H键弱化。
Chem Sci. 2025 Jun 5. doi: 10.1039/d5sc03298a.
3
A Foundational Shift in Models for Enzyme Function.酶功能模型的根本性转变。
J Am Chem Soc. 2025 May 7;147(18):14884-14904. doi: 10.1021/jacs.5c02388. Epub 2025 Apr 25.
4
Explaining Kinetic Isotope Effects in Proton-Coupled Electron Transfer Reactions.解释质子耦合电子转移反应中的动力学同位素效应。
Acc Chem Res. 2025 Apr 15;58(8):1335-1344. doi: 10.1021/acs.accounts.5c00119. Epub 2025 Apr 4.
5
Hydrogen Tunneling and Conformational Motions in Nonadiabatic Proton-Coupled Electron Transfer between Interfacial Tyrosines in Ribonucleotide Reductase.核糖核苷酸还原酶中界面酪氨酸之间非绝热质子耦合电子转移过程中的氢隧穿和构象运动
J Am Chem Soc. 2025 Feb 5;147(5):4459-4468. doi: 10.1021/jacs.4c15756. Epub 2025 Jan 22.
6
Photodetachment photoelectron spectroscopy shows isomer-specific proton-coupled electron transfer reactions in phenolic nitrate complexes.光解离光电子能谱显示了酚类硝酸盐配合物中异构体特异性的质子耦合电子转移反应。
Commun Chem. 2024 Aug 9;7(1):176. doi: 10.1038/s42004-024-01257-5.
7
Study of the Effects of Remote Heavy Group Vibrations on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD Model Reactions.远程重基团振动对NADH/NAD模型反应中氢化物动力学同位素效应温度依赖性的影响研究
ACS Omega. 2024 Apr 24;9(18):20593-20600. doi: 10.1021/acsomega.4c02383. eCollection 2024 May 7.
8
Identification of the Thermal Activation Network in Human 15-Lipoxygenase-2: Divergence from Plant Orthologs and Its Relationship to Hydrogen Tunneling Activation Barriers.人15-脂氧合酶-2热激活网络的鉴定:与植物直系同源物的差异及其与氢隧穿激活屏障的关系
ACS Catal. 2024 Mar 28;14(7):5444-5457. doi: 10.1021/acscatal.4c00439. eCollection 2024 Apr 5.
9
Structural Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD Model Reactions in Acetonitrile: Charge-Transfer Complex Tightness Is a Key.乙腈中NADH/NAD模型反应的氢化物动力学同位素效应温度依赖性的结构效应:电荷转移络合物的紧密性是关键。
J Org Chem. 2024 Mar 1;89(5):3184-3193. doi: 10.1021/acs.joc.3c02562. Epub 2024 Feb 16.
10
Exploring Proton-Coupled Electron Transfer at Multiple Scales.多尺度下质子耦合电子转移的探索
Nat Comput Sci. 2023 Apr;3(4):291-300. doi: 10.1038/s43588-023-00422-5. Epub 2023 Apr 6.