Knapp Michael J, Klinman Judith P
Department of Chemistry, University of California, Berkeley, CA 94720, USA.
Eur J Biochem. 2002 Jul;269(13):3113-21. doi: 10.1046/j.1432-1033.2002.03022.x.
Many biological C-H activation reactions exhibit nonclassical kinetic isotope effects (KIEs). These nonclassical KIEs are too large (kH/kD > 7) and/or exhibit unusual temperature dependence such that the Arrhenius prefactor KIEs (AH/AD) fall outside of the semiclassical range near unity. The focus of this minireview is to discuss such KIEs within the context of the environmentally coupled hydrogen tunneling model. Full tunneling models of hydrogen transfer assume that protein or solvent fluctuations generate a reactive configuration along the classical, heavy-atom coordinate, from which the hydrogen transfers via nuclear tunneling. Environmentally coupled tunneling also invokes an environmental vibration (gating) that modulates the tunneling barrier, leading to a temperature-dependent KIE. These properties directly link enzyme fluctuations to the reaction coordinate for hydrogen transfer, making a quantum view of hydrogen transfer necessarily a dynamic view of catalysis. The environmentally coupled hydrogen tunneling model leads to a range of magnitudes of KIEs, which reflect the tunneling barrier, and a range of AH/AD values, which reflect the extent to which gating modulates hydrogen transfer. Gating is the primary determinant of the temperature dependence of the KIE within this model, providing insight into the importance of this motion in modulating the reaction coordinate. The potential use of variable temperature KIEs as a direct probe of coupling between environmental dynamics and the reaction coordinate is described. The evolution from application of a tunneling correction to a full tunneling model in enzymatic H transfer reactions is discussed in the context of a thermophilic alcohol dehydrogenase and soybean lipoxygenase-1.
许多生物C-H活化反应表现出非经典动力学同位素效应(KIEs)。这些非经典KIEs过大(kH/kD > 7)和/或表现出异常的温度依赖性,使得阿仑尼乌斯前因子KIEs(AH/AD)落在接近1的半经典范围之外。本微型综述的重点是在环境耦合氢隧穿模型的背景下讨论此类KIEs。氢转移的完整隧穿模型假设蛋白质或溶剂波动沿着经典重原子坐标产生反应构型,氢通过核隧穿从该构型转移。环境耦合隧穿还引入了一种环境振动(门控),该振动调制隧穿势垒,导致与温度相关的KIE。这些特性直接将酶的波动与氢转移的反应坐标联系起来,使得氢转移的量子观点必然是催化的动态观点。环境耦合氢隧穿模型导致一系列反映隧穿势垒的KIEs大小,以及一系列反映门控对氢转移调制程度的AH/AD值。在该模型中,门控是KIE温度依赖性的主要决定因素,它为这种运动在调制反应坐标中的重要性提供了见解。描述了可变温度KIEs作为环境动力学与反应坐标之间耦合的直接探针的潜在用途。在嗜热醇脱氢酶和大豆脂氧合酶-1的背景下,讨论了在酶促氢转移反应中从应用隧穿校正到完整隧穿模型的演变。