Saenger W
Max-Planck-Institut für expetimentelle Medizin, Abteilung Chemie, 34, Hermann-Rein-Str. 3, Göttingen, Germany
FEBS Lett. 1970 Sep 24;10(2):81-84. doi: 10.1016/0014-5793(70)80421-5.
5'-Methylammonium-5'-deoxyadenosine is a poor subsrate for adenosine desaminase. The nucleoside was crystallized from aqueous methanol as its iodide monohydrate in space group P2(1). The structure was solved from three dimensional X-ray data and refined to R = 4.1%. The structure of the nucleoside is determined by an intramolecular hydrogen bond from N5' to N3 which implies that (1) the edenine heterocycle is in syn position with respect to the sugar moiety; (2) the ribose pucker is C2'-exo, C3'-endo and (3) the conformation about the C4'-C5' bond is trans, gauche. The water of hydration is fourfold disordered and forms a linear hydrophilic region which is surrounded by nucleoside molecules in a zigzag arrangement. The adenine heterocycles are not stacked and in closer than Van der Waals distance with iodine ions suggesting a charge transfer type interaction.
5'-甲基铵基-5'-脱氧腺苷是腺苷脱氨酶的一种不良底物。该核苷以其一水合碘化物的形式从甲醇水溶液中结晶出来,空间群为P2(1)。其结构通过三维X射线数据解析,并精修至R = 4.1%。该核苷的结构由从N5'到N3的分子内氢键决定,这意味着:(1) 腺嘌呤杂环相对于糖部分处于顺式位置;(2) 核糖构象为C2'-外式、C3'-内式;(3) C4'-C5'键的构象为反式、 gauche式。结晶水存在四重无序,形成一个线性亲水区域,该区域被呈锯齿状排列的核苷分子包围。腺嘌呤杂环没有堆积,且与碘离子的距离比范德华距离更近,表明存在电荷转移型相互作用。