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来自恶臭假单胞菌mt-2甲苯-二甲苯分解代谢质粒pWW0的第三种转座元件ISPpu12。

A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2.

作者信息

Williams Peter A, Jones Rheinallt M, Shaw Linda E

机构信息

School of Biological Sciences, University of Wales Bangor, Bangor, Gwynedd LL57 2UW, Wales, United Kingdom.

出版信息

J Bacteriol. 2002 Dec;184(23):6572-80. doi: 10.1128/JB.184.23.6572-6580.2002.

Abstract

A 3,372-bp insertion sequence, ISPpu12, has been identified on the archetypal toluene-xylene TOL catabolic plasmid pWW0 from Pseudomonas putida mt-2. The insertion sequence element is located on the plasmid between bases 84397 and 87768 in a region which also contains the termini and transposase genes of the catabolic transposons Tn4651 and Tn4653 (A. Greated, L. Lambertson, P. A. Williams, and C. M. Thomas, Environ. Microbiol., in press). ISPpu12 has terminal inverted repeats of 24 bp with three mismatches and contains four open reading frames, a tnpA homologue and three open reading frames (lspA, orf1, and orf2) of undetermined function. After insertion in vitro of a Km(r) cassette into ISPpu12 either in the intergenic region between orf1 and orf2 or directly into the orf1 gene and ligation into a suicide vector, the modified ISPpu12-Km transposes at high frequency, often in multiple copies, into the chromosome of a P. putida recipient. Inactivation of lspA, orf1, and orf2 by introducing a 7-bp deletion into the 5' region of each gene had no major effect upon transposition, but a similar mutation of tnpA completely eliminated transposition. Analysis of the literature and of strains derived from the chlorobenzoate-degrading Pseudomonas sp. strain B13 suggests that the promiscuity of this element has played an important role in the history of plasmid pWW0. Database comparisons and the accompanying paper (A. J. Weightman, A. W. Topping, K. E. Hill, L. L. Lee, K. Sakai, J. H. Slater, and A. W. Thomas, J. Bacteriol. 184:6581-6591, 2002) show that ISPpu12 is a transposable element also found in other bacteria.

摘要

已在恶臭假单胞菌mt-2的原型甲苯-二甲苯TOL分解代谢质粒pWW0上鉴定出一个3372 bp的插入序列ISPpu12。该插入序列元件位于质粒上84397至87768碱基之间的区域,该区域还包含分解代谢转座子Tn4651和Tn4653的末端及转座酶基因(A. Greated、L. Lambertson、P. A. Williams和C. M. Thomas,《环境微生物学》,即将发表)。ISPpu12具有24 bp的末端反向重复序列,有三个错配,包含四个开放阅读框,一个tnpA同源物和三个功能未确定的开放阅读框(lspA、orf1和orf2)。在体外将一个Km(r)盒插入ISPpu12的orf1和orf2之间的基因间隔区或直接插入orf1基因,并连接到自杀载体后,修饰后的ISPpu12-Km以高频转座,通常以多拷贝形式转座到恶臭假单胞菌受体的染色体中。通过在每个基因的5'区域引入一个7 bp的缺失来使lspA、orf1和orf2失活,对转座没有重大影响,但tnpA的类似突变完全消除了转座。对文献以及源自氯苯甲酸降解假单胞菌属菌株B13的菌株的分析表明,该元件的混杂性在质粒pWW0的历史中发挥了重要作用。数据库比较及随附论文(A. J. Weightman、A. W. Topping、K. E. Hill、L. L. Lee、K. Sakai、J. H. Slater和A. W. Thomas,《细菌学杂志》184:6581 - 6591,2002年)表明,ISPpu12是一种在其他细菌中也发现的转座元件。

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