卫星DNA图谱的变异——原因及影响。
Variation in satellite DNA profiles--causes and effects.
作者信息
Ugarković Durdica, Plohl Miroslav
机构信息
Department of Molecular Genetics, Ruder Boskoviać Institute, Bijenicka 54, HR-10002 Zagreb, Croatia.
出版信息
EMBO J. 2002 Nov 15;21(22):5955-9. doi: 10.1093/emboj/cdf612.
Abstract
Heterochromatic regions of the eukaryotic genome harbour DNA sequences that are repeated many times in tandem, collectively known as satellite DNAs. Different satellite sequences co-exist in the genome, thus forming a set called a satellite DNA library. Within a library, satellite DNAs represent independent evolutionary units. Their evolution can be explained as a result of change in two parameters: copy number and nucleotide sequence, both of them ruled by the same mechanisms of concerted evolution. Individual change in either of these two parameters as well as their simultaneous evolution can lead to the genesis of species-specific satellite profiles. In some cases, changes in satellite DNA profiles can be correlated with chromosomal evolution and could possibly influence the evolution of species.
摘要
真核生物基因组的异染色质区域含有串联重复多次的DNA序列，统称为卫星DNA。不同的卫星序列共存于基因组中，从而形成一个称为卫星DNA文库的集合。在一个文库中，卫星DNA代表独立的进化单元。它们的进化可以解释为两个参数变化的结果：拷贝数和核苷酸序列，这两个参数均受协同进化的相同机制支配。这两个参数中任何一个的个体变化以及它们的同时进化都可能导致物种特异性卫星图谱的产生。在某些情况下，卫星DNA图谱的变化可能与染色体进化相关，并可能影响物种的进化。
相似文献
1
Variation in satellite DNA profiles--causes and effects.卫星DNA图谱的变异——原因及影响。
EMBO J. 2002 Nov 15;21(22):5955-9. doi: 10.1093/emboj/cdf612.
2
Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin.自私性与功能性之间的卫星DNA：着丝粒（异）染色质中串联重复序列的结构、基因组学及进化
Gene. 2008 Feb 15;409(1-2):72-82. doi: 10.1016/j.gene.2007.11.013. Epub 2007 Dec 4.
3
Satellite DNA evolution.卫星DNA进化
Genome Dyn. 2012;7:126-52. doi: 10.1159/000337122. Epub 2012 Jun 25.
4
Evolution of satellite DNAs from the genus Palorus--experimental evidence for the "library" hypothesis.来自扁谷盗属的卫星DNA的进化——“文库”假说的实验证据。
Mol Biol Evol. 1998 Aug;15(8):1062-8. doi: 10.1093/oxfordjournals.molbev.a026005.
5
Evolutionary dynamics of an at-rich satellite DNA and its contribution to karyotype differentiation in wild diploid Arachis species.富含AT的卫星DNA的进化动力学及其对野生二倍体花生属物种核型分化的贡献。
Mol Genet Genomics. 2017 Apr;292(2):283-296. doi: 10.1007/s00438-016-1271-3. Epub 2016 Nov 12.
6
Natural History of a Satellite DNA Family: From the Ancestral Genome Component to Species-Specific Sequences, Concerted and Non-Concerted Evolution.卫星 DNA 家族的自然史：从祖先基因组成分到物种特异性序列、协同进化和非协同进化。
Int J Mol Sci. 2019 Mar 9;20(5):1201. doi: 10.3390/ijms20051201.
7
Satellite DNA in Plants: More than Just Rubbish.植物中的卫星DNA：不止是垃圾序列。
Cytogenet Genome Res. 2015;146(2):153-170. doi: 10.1159/000437008. Epub 2015 Jul 18.
8
Satellite DNA as a driver of population divergence in the red flour beetle Tribolium castaneum.卫星DNA作为赤拟谷盗种群分化的驱动因素。
Genome Biol Evol. 2014 Dec 19;7(1):228-39. doi: 10.1093/gbe/evu280.
9
Evolution of ancient satellite DNAs in sturgeon genomes.鲟鱼基因组中古老卫星DNA的进化
Gene. 2004 Aug 18;338(1):133-42. doi: 10.1016/j.gene.2004.06.001.
10
A new family of satellite DNA sequences as a major component of centromeric heterochromatin in owls (Strigiformes).一个新的卫星DNA序列家族作为猫头鹰（鸮形目）着丝粒异染色质的主要组成部分。
Chromosoma. 2004 Mar;112(6):277-87. doi: 10.1007/s00412-003-0267-z. Epub 2004 Mar 3.
引用本文的文献
1
Exploring the Satellitome of the Pest Aphid Acyrthosiphon pisum (Hemiptera, Aphididae): Insights Into Genome Organization and Intraspecies Evolution.探索害虫豌豆蚜（半翅目，蚜科）的卫星基因组：对基因组组织和种内进化的见解
Genome Biol Evol. 2025 Jul 3;17(7). doi: 10.1093/gbe/evaf104.
2
New Insights into the Sex Chromosome Evolution of the Common Barker Frog Species Complex (Anura, Leptodactylidae) Inferred from Its Satellite DNA Content.从卫星DNA含量推断普通巴克尔蛙物种复合体（无尾目，细趾蟾科）性染色体进化的新见解
Biomolecules. 2025 Jun 16;15(6):876. doi: 10.3390/biom15060876.
3
Repeatome diversity in sea anemone genomics (Cnidaria: Actiniaria) based on the Actiniaria-REPlib library.基于海葵重复序列文库（Actiniaria-REPlib）的海葵基因组学（刺胞动物门：海葵目）中的重复序列多样性
BMC Genomics. 2025 May 13;26(1):473. doi: 10.1186/s12864-025-11591-0.
4
Satellitome Analysis of (Coleoptera): Revealing Centromeric Turnover and Potential Chromosome Rearrangements in a Comparative Interspecific Study.鞘翅目昆虫卫星组分析：比较种间研究揭示着丝粒转换和潜在的染色体重排。
Int J Mol Sci. 2024 Aug 25;25(17):9214. doi: 10.3390/ijms25179214.
5
Molecular evolution of the mammalian kinetochore complex.哺乳动物动粒复合体的分子进化
bioRxiv. 2024 Jun 27:2024.06.27.600994. doi: 10.1101/2024.06.27.600994.
6
Comparative Evolutionary Genomics in Insects.昆虫比较进化基因组学。
Methods Mol Biol. 2024;2802:473-514. doi: 10.1007/978-1-0716-3838-5_16.
7
Cytogenetic Analysis of Satellitome of Madagascar Leaf-Tailed Geckos.马达加斯加叶尾壁虎卫星基因组的细胞遗传学分析
Genes (Basel). 2024 Mar 28;15(4):429. doi: 10.3390/genes15040429.
8
Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges.对 600 多种昆虫基因组的分析揭示了重复元件的动态，并突出了生物多样性规模的重复注释挑战。
Genome Res. 2023 Oct;33(10):1708-1717. doi: 10.1101/gr.277387.122. Epub 2023 Sep 22.
9
Chromosomal Rearrangements and Satellite DNAs: Extensive Chromosome Reshuffling and the Evolution of Neo-Sex Chromosomes in the Genus (Teleostei; Characiformes).染色体重排和卫星 DNA：（硬骨鱼纲；脂鲤目）属中的广泛染色体重排和新性染色体的进化。
Int J Mol Sci. 2023 Sep 4;24(17):13654. doi: 10.3390/ijms241713654.
10
Analysis in genome illuminates the satellite DNA content in a frog from the Brazilian Atlantic forest.基因组分析揭示了来自巴西大西洋森林的一种青蛙的卫星DNA含量。
Front Genet. 2023 Mar 29;14:1101397. doi: 10.3389/fgene.2023.1101397. eCollection 2023.
本文引用的文献
1
Evolutionary dynamics of satellite DNA family PIM357 in species of the genus Pimelia (Tenebrionidae, Coleoptera).皮蠹属（拟步甲科，鞘翅目）物种中卫星DNA家族PIM357的进化动态
Mol Biol Evol. 2002 Aug;19(8):1329-40. doi: 10.1093/oxfordjournals.molbev.a004194.
2
Sequence of PRAT satellite DNA "frozen" in some Coleopteran species.PRAT卫星DNA序列在一些鞘翅目物种中“冻结”。
J Mol Evol. 2002 Jun;54(6):774-83. doi: 10.1007/s00239-001-0079-9.
3
CENP-A, -B, and -C chromatin complex that contains the I-type alpha-satellite array constitutes the prekinetochore in HeLa cells.包含I型α-卫星阵列的着丝粒蛋白A、B和C染色质复合体构成了HeLa细胞中的前动粒。
Mol Cell Biol. 2002 Apr;22(7):2229-41. doi: 10.1128/MCB.22.7.2229-2241.2002.
4
PlantSat: a specialized database for plant satellite repeats.植物卫星序列数据库：一个专门用于植物卫星重复序列的数据库。
Bioinformatics. 2002 Jan;18(1):28-35. doi: 10.1093/bioinformatics/18.1.28.
5
Genomic and genetic definition of a functional human centromere.功能性人类着丝粒的基因组和遗传学定义。
Science. 2001 Oct 5;294(5540):109-15. doi: 10.1126/science.1065042.
6
Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): a phylogenetic approach.卫星DNA的反复扩增和缺失伴随着南美洲栉鼠（栉鼠属，啮齿目：八齿鼠科）的染色体多样化：一种系统发育方法。
Mol Biol Evol. 2001 Sep;18(9):1708-19. doi: 10.1093/oxfordjournals.molbev.a003959.
7
The centromere paradox: stable inheritance with rapidly evolving DNA.着丝粒悖论：DNA快速进化下的稳定遗传
Science. 2001 Aug 10;293(5532):1098-102. doi: 10.1126/science.1062939.
8
Mutation and recombination in cattle satellite DNA: a feedback model for the evolution of satellite DNA repeats.牛卫星DNA中的突变与重组：卫星DNA重复序列进化的反馈模型
J Mol Evol. 2001 Apr;52(4):361-71. doi: 10.1007/s002390010166.
9
Adaptive evolution of Cid, a centromere-specific histone in Drosophila.果蝇中着丝粒特异性组蛋白Cid的适应性进化。
Genetics. 2001 Mar;157(3):1293-8. doi: 10.1093/genetics/157.3.1293.
10
Slow rates of evolution and sequence homogenization in an ancient satellite DNA family of sturgeons.
Mol Biol Evol. 2001 Mar;18(3):432-6. doi: 10.1093/oxfordjournals.molbev.a003820.
Zotero 插件