Wolterink A F W M, Jonker A B, Kengen S W M, Stams A J M
Int J Syst Evol Microbiol. 2002 Nov;52(Pt 6):2183-2190. doi: 10.1099/00207713-52-6-2183.
A Gram-negative, facultatively anaerobic, rod-shaped, dissimilatory chlorate-reducing bacterium, strain AW-1(T), was isolated from biomass of an anaerobic chlorate-reducing bioreactor. Phylogenetic analysis of the 16S rDNA sequence showed 100% sequence similarity to Pseudomonas stutzeri DSM 50227 and 98.6% sequence similarity to the type strain of P. stutzeri (DSM 5190(T)). The species P. stutzeri possesses a high degree of genotypic and phenotypic heterogeneity. Therefore, eight genomic groups, termed genomovars, have been proposed based upon deltaTm values, which were used to evaluate the quality of the pairing within heteroduplexes formed by DNA-DNA hybridization. In this study, DNA-DNA hybridization between strain AW-1(T) and P. stutzeri strains DSM 50227 and DSM 5190(T) revealed respectively 80.5 and 56.5% similarity. DNA-DNA hybridization between P. stutzeri strains DSM 50227 and DSM 5190(T) revealed 48.4% similarity. DNA-DNA hybridization indicated that strain AW-1(T) is not related at the species level to the type strain of P. stutzeri. However, strain AW-1(T) and P. stutzeri DSM 50227 are related at the species level. The physiological and biochemical properties of strain AW-1(T) and the two P. stutzeri strains were compared. A common characteristic of P. stutzeri strains is the ability to denitrify. However, in growth experiments, strain AW-1(T) could use only chlorate or oxygen as an electron acceptor and not nitrate, perchlorate or bromate. Strain AW-1(T) is the first chlorate-reducing bacterium described that does not possess another oxyanion-reduction pathway. Cell extracts of strain AW-1(T) showed chlorate and bromate reductase activities but not nitrate reductase activity. P. stutzeri strains DSM 50227 and DSM 5190(T) could use nitrate or oxygen as an electron acceptor, but not chlorate. Chlorate reductase activity, in addition to nitrate reductase activity, was detected in cell extracts of both P. stutzeri strains. Chlorite dismutase activity was absent in extracts of both P. stutzeri strains but was present in extracts of strain AW-1(T). Based on the hybridization experiments and the physiological and biochemical data, it is proposed that strain AW-1(T) be classified as a novel species of Pseudomonas, Pseudomonas chloritidismutans sp. nov. The type strain is strain AW-1(T) (= DSM 13592(T) = ATCC BAA-443(T)).
从一个厌氧氯酸盐还原生物反应器的生物质中分离出一株革兰氏阴性、兼性厌氧、杆状、异化氯酸盐还原细菌,菌株AW-1(T)。对16S rDNA序列的系统发育分析表明,其与施氏假单胞菌DSM 50227的序列相似性为100%,与施氏假单胞菌模式菌株(DSM 5190(T))的序列相似性为98.6%。施氏假单胞菌物种具有高度的基因型和表型异质性。因此,基于ΔTm值提出了八个基因组群,称为基因组变种,用于评估DNA-DNA杂交形成的异源双链体内配对的质量。在本研究中,菌株AW-1(T)与施氏假单胞菌菌株DSM 50227和DSM 5190(T)之间的DNA-DNA杂交分别显示出80.5%和56.5%的相似性。施氏假单胞菌菌株DSM 50227和DSM 5190(T)之间的DNA-DNA杂交显示出48.4%的相似性。DNA-DNA杂交表明,菌株AW-1(T)在物种水平上与施氏假单胞菌模式菌株无关。然而,菌株AW-1(T)与施氏假单胞菌DSM 50227在物种水平上相关。比较了菌株AW-1(T)与这两株施氏假单胞菌的生理生化特性。施氏假单胞菌菌株的一个共同特征是具有反硝化能力。然而,在生长实验中,菌株AW-1(T)只能利用氯酸盐或氧气作为电子受体,而不能利用硝酸盐、高氯酸盐或溴酸盐。菌株AW-1(T)是描述的第一株不具有其他氧阴离子还原途径的氯酸盐还原细菌。菌株AW-1(T)的细胞提取物显示出氯酸盐和溴酸盐还原酶活性,但没有硝酸盐还原酶活性。施氏假单胞菌菌株DSM 50227和DSM 5190(T)可以利用硝酸盐或氧气作为电子受体,但不能利用氯酸盐。在这两株施氏假单胞菌的细胞提取物中均检测到除硝酸盐还原酶活性外的氯酸盐还原酶活性。两株施氏假单胞菌的提取物中均不存在亚氯酸盐歧化酶活性,但菌株AW-1(T)的提取物中存在该活性。基于杂交实验以及生理生化数据,建议将菌株AW-1(T)分类为假单胞菌属的一个新物种,即亚氯酸盐歧化假单胞菌(Pseudomonas chloritidismutans sp. nov.)。模式菌株为菌株AW-1(T)(= DSM 13592(T) = ATCC BAA-443(T))。