• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

确定嗜热栖热菌核酶机械解折叠的动力学障碍。

Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme.

作者信息

Onoa Bibiana, Dumont Sophie, Liphardt Jan, Smith Steven B, Tinoco Ignacio, Bustamante Carlos

机构信息

Department of Physics and Department of Molecular and Cell Biology and Howard Hughes Medical Institute.

出版信息

Science. 2003 Mar 21;299(5614):1892-5. doi: 10.1126/science.1081338.

DOI:10.1126/science.1081338
PMID:12649482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1503549/
Abstract

Mechanical unfolding trajectories for single molecules of the Tetrahymena thermophila ribozyme display eight intermediates corresponding to discrete kinetic barriers that oppose mechanical unfolding with lifetimes of seconds and rupture forces between 10 and 30 piconewtons. Barriers are magnesium dependent and correspond to known intra- and interdomain interactions. Several barrier structures are "brittle," breakage requiring high forces but small (1 to 3 nanometers) deformations. Barrier crossing is stochastic, leading to variable unfolding paths. The response of complex RNA structures to locally applied mechanical forces may be analogous to the responses of RNA during translation, messenger RNA export from the nucleus, and viral replication.

摘要

嗜热四膜虫核酶单分子的机械展开轨迹显示出八个中间体,对应于离散的动力学屏障,这些屏障阻碍机械展开,其寿命为几秒,断裂力在10到30皮牛顿之间。屏障依赖于镁,对应于已知的域内和域间相互作用。几个屏障结构是“脆性的”,断裂需要高力但小(1至3纳米)变形。屏障穿越是随机的,导致可变的展开路径。复杂RNA结构对局部施加的机械力的响应可能类似于RNA在翻译、信使RNA从细胞核输出和病毒复制过程中的响应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/77248eab41d6/nihms10104f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/0b75f02896c2/nihms10104f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/ab6e719378ff/nihms10104f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/49305e407a93/nihms10104f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/77248eab41d6/nihms10104f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/0b75f02896c2/nihms10104f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/ab6e719378ff/nihms10104f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/49305e407a93/nihms10104f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b48b/1503549/77248eab41d6/nihms10104f4.jpg

相似文献

1
Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme.确定嗜热栖热菌核酶机械解折叠的动力学障碍。
Science. 2003 Mar 21;299(5614):1892-5. doi: 10.1126/science.1081338.
2
Reversible unfolding of single RNA molecules by mechanical force.通过机械力使单个RNA分子发生可逆解折叠
Science. 2001 Apr 27;292(5517):733-7. doi: 10.1126/science.1058498.
3
Equilibrium properties and force-driven unfolding pathways of RNA molecules.RNA 分子的平衡性质和力驱动的展开途径。
Phys Rev Lett. 2009 Oct 30;103(18):188102. doi: 10.1103/PhysRevLett.103.188102. Epub 2009 Oct 29.
4
Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme.嗜热栖热四膜虫L-21核酶折叠的多种单价离子依赖性途径。
J Mol Biol. 2003 Apr 25;328(2):463-78. doi: 10.1016/s0022-2836(03)00247-x.
5
Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme.嗜热四膜虫核酶的单价离子介导折叠
J Mol Biol. 2004 Oct 1;342(5):1431-42. doi: 10.1016/j.jmb.2004.07.092.
6
Kinetic intermediates trapped by native interactions in RNA folding.RNA折叠过程中由天然相互作用捕获的动力学中间体。
Science. 1998 Mar 20;279(5358):1943-6. doi: 10.1126/science.279.5358.1943.
7
Stability and cooperativity of individual tertiary contacts in RNA revealed through chemical denaturation.通过化学变性揭示RNA中单个三级接触的稳定性和协同性。
Nat Struct Biol. 2000 May;7(5):371-4. doi: 10.1038/75139.
8
Unfolding single RNA molecules: bridging the gap between equilibrium and non-equilibrium statistical thermodynamics.展开单个RNA分子:弥合平衡态与非平衡态统计热力学之间的差距
Q Rev Biophys. 2005 Nov;38(4):291-301. doi: 10.1017/S0033583506004239. Epub 2006 Jul 3.
9
New pathways in folding of the Tetrahymena group I RNA enzyme.嗜热四膜虫I组RNA酶折叠的新途径。
J Mol Biol. 1999 Sep 3;291(5):1155-67. doi: 10.1006/jmbi.1999.3026.
10
Mapping the kinetic barriers of a Large RNA molecule's folding landscape.绘制大型RNA分子折叠景观的动力学障碍
PLoS One. 2014 Feb 25;9(2):e85041. doi: 10.1371/journal.pone.0085041. eCollection 2014.

引用本文的文献

1
Roquin exhibits opposing effects on RNA stem-loop stability through its two ROQ domain binding sites.Roquin通过其两个ROQ结构域结合位点对RNA茎环稳定性表现出相反的作用。
Proc Natl Acad Sci U S A. 2025 Apr 15;122(15):e2424434122. doi: 10.1073/pnas.2424434122. Epub 2025 Apr 9.
2
A hammerhead ribozyme selects mechanically stable conformations for catalysis against viral RNA.锤头状核酶选择机械稳定的构象以催化对抗病毒RNA。
Commun Biol. 2025 Feb 3;8(1):165. doi: 10.1038/s42003-025-07600-3.
3
Mechanical strength of RNA knot in Zika virus protects against cellular defenses.

本文引用的文献

1
Optical-trap force transducer that operates by direct measurement of light momentum.通过直接测量光动量来工作的光镊力传感器。
Methods Enzymol. 2003;361:134-62. doi: 10.1016/s0076-6879(03)61009-8.
2
Unzipping DNA with optical tweezers: high sequence sensitivity and force flips.用光学镊子解开DNA:高序列敏感性和力反转
Biophys J. 2002 Mar;82(3):1537-53. doi: 10.1016/S0006-3495(02)75506-9.
3
Force-induced denaturation of RNA.力诱导的RNA变性
寨卡病毒中 RNA 结的机械强度可抵抗细胞防御。
Nat Chem Biol. 2021 Sep;17(9):975-981. doi: 10.1038/s41589-021-00829-z. Epub 2021 Jul 12.
4
Molecular mechanisms underlying the extreme mechanical anisotropy of the flaviviral exoribonuclease-resistant RNAs (xrRNAs).黄病毒外切核糖核酸酶抗性 RNA(xrRNA)的极端机械各向异性的分子机制。
Nat Commun. 2020 Oct 30;11(1):5496. doi: 10.1038/s41467-020-19260-4.
5
Ensemble Sensing Using Single-Molecule DNA Copolymers.基于单分子 DNA 共聚物的集成传感。
Anal Chem. 2020 Oct 6;92(19):13126-13133. doi: 10.1021/acs.analchem.0c02196. Epub 2020 Sep 8.
6
Significant Differences in RNA Structure Destabilization by HIV-1 GagDp6 and NCp7 Proteins.HIV-1 GagDp6 和 NCp7 蛋白对 RNA 结构的破坏存在显著差异。
Viruses. 2020 Apr 25;12(5):484. doi: 10.3390/v12050484.
7
The Role of Proton Transfer on Mutations.质子转移在突变中的作用。
Front Chem. 2019 Aug 21;7:536. doi: 10.3389/fchem.2019.00536. eCollection 2019.
8
Complex dynamics under tension in a high-efficiency frameshift stimulatory structure.在高效移码刺激结构中张力下的复杂动力学。
Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19500-19505. doi: 10.1073/pnas.1905258116. Epub 2019 Aug 13.
9
Measuring the average shape of transition paths during the folding of a single biological molecule.测量单个生物分子折叠过程中过渡路径的平均形状。
Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8125-8130. doi: 10.1073/pnas.1816602116. Epub 2019 Apr 5.
10
Localized Nanoscale Heating Leads to Ultrafast Hydrogel Volume-Phase Transition.局部纳米尺度加热导致水凝胶超快的体积相转变。
ACS Nano. 2019 Jan 22;13(1):515-525. doi: 10.1021/acsnano.8b07150. Epub 2018 Dec 24.
Biophys J. 2001 Sep;81(3):1324-32. doi: 10.1016/S0006-3495(01)75789-X.
4
Beyond kinetic traps in RNA folding.超越RNA折叠中的动力学陷阱。
Curr Opin Struct Biol. 2001 Jun;11(3):309-14. doi: 10.1016/s0959-440x(00)00206-2.
5
Reversible unfolding of single RNA molecules by mechanical force.通过机械力使单个RNA分子发生可逆解折叠
Science. 2001 Apr 27;292(5517):733-7. doi: 10.1126/science.1058498.
6
Early events in RNA folding.RNA折叠的早期事件
Annu Rev Phys Chem. 2001;52:751-62. doi: 10.1146/annurev.physchem.52.1.751.
7
Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions.突变型核酶结构域增强稳定性的结构基础及RNA与溶剂相互作用的详细视图。
Structure. 2001 Mar 7;9(3):221-31. doi: 10.1016/s0969-2126(01)00579-2.
8
Multiple folding pathways for the P4-P6 RNA domain.P4-P6 RNA结构域的多种折叠途径。
Biochemistry. 2000 Oct 10;39(40):12465-75. doi: 10.1021/bi000828y.
9
A single-molecule study of RNA catalysis and folding.RNA催化与折叠的单分子研究。
Science. 2000 Jun 16;288(5473):2048-51. doi: 10.1126/science.288.5473.2048.
10
Stability and cooperativity of individual tertiary contacts in RNA revealed through chemical denaturation.通过化学变性揭示RNA中单个三级接触的稳定性和协同性。
Nat Struct Biol. 2000 May;7(5):371-4. doi: 10.1038/75139.