• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过主动控制技术探测膜通道中DNA分子的动力学。

Dynamics of DNA molecules in a membrane channel probed by active control techniques.

作者信息

Bates Mark, Burns Michael, Meller Amit

机构信息

The Rowland Institute at Harvard University, Cambridge, Massachusetts 02142, USA.

出版信息

Biophys J. 2003 Apr;84(4):2366-72. doi: 10.1016/S0006-3495(03)75042-5.

DOI:10.1016/S0006-3495(03)75042-5
PMID:12668445
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1302803/
Abstract

The dynamics of single-stranded DNA in an alpha-Hemolysin protein pore was studied at the single-molecule level. The escape time for DNA molecules initially drawn into the pore was measured in the absence of an externally applied electric field. These measurements revealed two well-separated timescales, one of which is surprisingly long (on the order of milliseconds). We characterized the long timescale as being associated with the binding and unbinding of DNA from the pore. We have also found that a transmembrane potential as small as 20 mV strongly biased the escape of DNA from the pore. These experiments have been made possible due to the development of a feedback control system, allowing the rapid modulation of the applied force on individual DNA molecules while inside the pore.

摘要

在单分子水平上研究了α-溶血素蛋白孔中单链DNA的动力学。在没有外部施加电场的情况下,测量了最初被吸入孔中的DNA分子的逃逸时间。这些测量揭示了两个明显分开的时间尺度,其中一个长得惊人(在毫秒量级)。我们将长的时间尺度表征为与DNA在孔中的结合和解离有关。我们还发现,低至20 mV的跨膜电位会强烈影响DNA从孔中的逃逸。由于反馈控制系统的发展,这些实验得以实现,该系统允许在DNA分子位于孔内时快速调节施加在单个DNA分子上的力。

相似文献

1
Dynamics of DNA molecules in a membrane channel probed by active control techniques.通过主动控制技术探测膜通道中DNA分子的动力学。
Biophys J. 2003 Apr;84(4):2366-72. doi: 10.1016/S0006-3495(03)75042-5.
2
Field-dependent effect of crown ether (18-crown-6) on ionic conductance of alpha-hemolysin channels.冠醚(18-冠-6)对α-溶血素通道离子电导的场依赖效应。
Biophys J. 2004 Nov;87(5):3162-71. doi: 10.1529/biophysj.104.044453.
3
Protein electrostriction: a possibility of elastic deformation of the alpha-hemolysin channel by the applied field.
Eur Biophys J. 2005 Nov;34(8):997-1006. doi: 10.1007/s00249-005-0485-9. Epub 2005 Jul 15.
4
Imaging the dynamics of individual electropores.对单个电穿孔的动力学进行成像。
Proc Natl Acad Sci U S A. 2016 May 10;113(19):5281-6. doi: 10.1073/pnas.1517437113. Epub 2016 Apr 25.
5
Nanopore unzipping of individual DNA hairpin molecules.单个DNA发夹分子的纳米孔解链
Biophys J. 2004 Nov;87(5):3205-12. doi: 10.1529/biophysj.104.047274. Epub 2004 Sep 3.
6
Controlling the translocation of single-stranded DNA through alpha-hemolysin ion channels using viscosity.利用粘度控制单链DNA通过α-溶血素离子通道的转运
Langmuir. 2009 Jan 20;25(2):1233-7. doi: 10.1021/la803556p.
7
Self-energy-limited ion transport in subnanometer channels.亚纳米通道中的自能量限制离子传输。
Phys Rev Lett. 2006 Sep 22;97(12):128104. doi: 10.1103/PhysRevLett.97.128104. Epub 2006 Sep 21.
8
Effective charge and free energy of DNA inside an ion channel.离子通道内DNA的有效电荷和自由能。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 1):021906. doi: 10.1103/PhysRevE.75.021906. Epub 2007 Feb 15.
9
Electromagnetic field (EMF) effects on channel activity of nanopore OmpF protein.电磁场对纳米孔OmpF蛋白通道活性的影响。
Eur Biophys J. 2009 Oct;38(8):1069-78. doi: 10.1007/s00249-009-0511-4. Epub 2009 Jul 15.
10
Probing distance and electrical potential within a protein pore with tethered DNA.用拴系DNA探测蛋白质孔内的探测距离和电势。
Biophys J. 2002 Dec;83(6):3202-10. doi: 10.1016/S0006-3495(02)75322-8.

引用本文的文献

1
A Critical Review on the Sensing, Control, and Manipulation of Single Molecules on Optofluidic Devices.光流控器件上单分子传感、控制与操纵的批判性综述
Micromachines (Basel). 2022 Jun 18;13(6):968. doi: 10.3390/mi13060968.
2
Time Estimation of Polymer Translocation through Nano-Membrane.聚合物通过纳米膜转运的时间估计
Polymers (Basel). 2022 May 20;14(10):2090. doi: 10.3390/polym14102090.
3
Single-molecule Study on the Interactions between Cyclic Nonribosomal Peptides and Protein Nanopore.环非核糖体肽与蛋白质纳米孔相互作用的单分子研究
ACS Appl Bio Mater. 2020 Jan 21;3(1):554-560. doi: 10.1021/acsabm.9b00961. Epub 2019 Dec 16.
4
Recent advances in integrated solid-state nanopore sensors.近年来固态纳米孔传感器的集成技术进展。
Lab Chip. 2021 Aug 21;21(16):3030-3052. doi: 10.1039/d1lc00294e. Epub 2021 Jun 17.
5
Biological Nanopores: Engineering on Demand.生物纳米孔:按需工程
Life (Basel). 2021 Jan 5;11(1):27. doi: 10.3390/life11010027.
6
Charge, Diffusion, and Current Fluctuations of Single-Stranded DNA Trapped in an MspA Nanopore.被困于MspA纳米孔中的单链DNA的电荷、扩散及电流波动
Biophys J. 2017 Jan 24;112(2):368-375. doi: 10.1016/j.bpj.2016.12.007.
7
PROBING SINGLE DNA MOLECULE TRANSPORT USING FABRICATED NANOPORES.利用人工制造的纳米孔探测单个DNA分子的转运
Nano Lett. 2004 Nov;4(11):2293-2298. doi: 10.1021/nl048654j.
8
Escape of DNA from a weakly biased thin nanopore: experimental evidence for a universal diffusive behavior.DNA 从弱偏置薄纳米孔中的逃逸:通用扩散行为的实验证据。
Phys Rev Lett. 2013 Dec 13;111(24):248301. doi: 10.1103/PhysRevLett.111.248301. Epub 2013 Dec 12.
9
Slowing down single-molecule trafficking through a protein nanopore reveals intermediates for peptide translocation.减缓单分子通过蛋白质纳米孔的运输揭示了肽转运的中间体。
Sci Rep. 2014 Jan 27;4:3885. doi: 10.1038/srep03885.
10
Slow DNA transport through nanopores in hafnium oxide membranes.氧化铪纳米孔内 DNA 的缓慢传输。
ACS Nano. 2013 Nov 26;7(11):10121-10128. doi: 10.1021/nn404326f. Epub 2013 Oct 4.

本文引用的文献

1
Single molecule measurements of DNA transport through a nanopore.通过纳米孔对DNA转运进行的单分子测量。
Electrophoresis. 2002 Aug;23(16):2583-91. doi: 10.1002/1522-2683(200208)23:16<2583::AID-ELPS2583>3.0.CO;2-H.
2
Anomalous dynamics of translocation.易位的异常动力学
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jan;65(1 Pt 1):011802. doi: 10.1103/PhysRevE.65.011802. Epub 2001 Dec 14.
3
Kinetics of duplex formation for individual DNA strands within a single protein nanopore.单个蛋白质纳米孔内各DNA链双链形成的动力学
Proc Natl Acad Sci U S A. 2001 Nov 6;98(23):12996-3001. doi: 10.1073/pnas.231434698. Epub 2001 Oct 23.
4
Kinetics and mechanism of DNA uptake into the cell nucleus.DNA摄入细胞核的动力学与机制。
Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7247-52. doi: 10.1073/pnas.121067698. Epub 2001 Jun 5.
5
Voltage-driven DNA translocations through a nanopore.电压驱动的DNA通过纳米孔的转位。
Phys Rev Lett. 2001 Apr 9;86(15):3435-8. doi: 10.1103/PhysRevLett.86.3435.
6
Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel.利用离子通道以单核苷酸分辨率对单个DNA发夹分子进行快速区分。
Nat Biotechnol. 2001 Mar;19(3):248-52. doi: 10.1038/85696.
7
Driven DNA transport into an asymmetric nanometer-scale pore.驱动DNA转运进入不对称纳米级孔隙。
Phys Rev Lett. 2000 Oct 2;85(14):3057-60. doi: 10.1103/PhysRevLett.85.3057.
8
Ion channels as molecular coulter counters to probe metabolite transport.作为分子库尔特计数器的离子通道用于探测代谢物转运。
J Membr Biol. 2000 Mar 1;174(1):1-13. doi: 10.1007/s002320001026.
9
Rapid nanopore discrimination between single polynucleotide molecules.单链多核苷酸分子的快速纳米孔鉴别
Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1079-84. doi: 10.1073/pnas.97.3.1079.
10
Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules.多聚胞苷酸、多聚腺苷酸和多聚尿苷酸作为同聚物或单个RNA分子内的片段在微秒时间尺度上的区分。
Biophys J. 1999 Dec;77(6):3227-33. doi: 10.1016/S0006-3495(99)77153-5.