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MATCH: A tool for searching transcription factor binding sites in DNA sequences.
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Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
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TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.
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COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.
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FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.
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Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
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TRANSCompel: a database on composite regulatory elements in eukaryotic genes.
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Saltations of cis-regulatory modules in Canidae and Hominidae.
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RegRNA 3.0: expanding regulatory RNA analysis with new features for motif, interaction, and annotation.
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Data-driven extraction of human kinase-substrate relationships from omics datasets.
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Proteomic Analysis Identifies Multiple Mechanisms of 5-Fluorouracil-Induced Gut Mucositis in Mice.
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The evaluation of transcription factor binding site prediction tools in human and Arabidopsis genomes.
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KLF5 Shapes Developing Respiratory Tubules by Inhibiting Actin Asymmetry in Epithelial Cells.
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Regulatory context is a crucial part of gene function.
Trends Genet. 2002 Feb;18(2):60-3. doi: 10.1016/s0168-9525(02)02591-x.
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The TRANSFAC system on gene expression regulation.
Nucleic Acids Res. 2001 Jan 1;29(1):281-3. doi: 10.1093/nar/29.1.281.
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EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.
Nucleic Acids Res. 1999 Jan 1;27(1):200-3. doi: 10.1093/nar/27.1.200.
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Transcription regulatory region analysis using signal detection and fuzzy clustering.
Bioinformatics. 1998;14(3):244-51. doi: 10.1093/bioinformatics/14.3.244.
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SIGNAL SCAN 4.0: additional databases and sequence formats.
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