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脊椎动物祖先谱系中的功能进化,或者基因组复杂性在拖着形态学的尾巴之时。

Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail.

作者信息

Aburomia Rami, Khaner Oded, Sidow Arend

机构信息

Department of Pathology, Stanford University Medical Center, Room 248B, 300 Pasteur Drive, Stanford, CA 94305-5324, USA.

出版信息

J Struct Funct Genomics. 2003;3(1-4):45-52.

PMID:12836684
Abstract

Early vertebrate evolution is characterized by a significant increase of organismal complexity over a relatively short time span. We present quantitative evidence for a high rate of increase in morphological complexity during early vertebrate evolution. Possible molecular evolutionary mechanisms that underlie this increase in complexity fall into a small number of categories, one of which is gene duplication and subsequent structural or regulatory neofunctionalization. We discuss analyses of two gene families whose regulatory and structural evolution shed light on the connection between gene duplication and increases in organismal complexity.

摘要

早期脊椎动物的进化特点是在相对较短的时间跨度内机体复杂性显著增加。我们提供了定量证据,证明早期脊椎动物进化过程中形态复杂性的高增长率。导致这种复杂性增加的可能分子进化机制可分为少数几类,其中之一是基因复制以及随后的结构或调控新功能化。我们讨论了对两个基因家族的分析,其调控和结构进化揭示了基因复制与机体复杂性增加之间的联系。

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J Struct Funct Genomics. 2003;3(1-4):45-52.
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引用本文的文献

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Phylogenetic analysis of kindlins suggests subfunctionalization of an ancestral unduplicated kindlin into three paralogs in vertebrates.系统发生分析表明,脊椎动物中一个祖先未复制的联接蛋白发生了亚功能化,形成了三个同源蛋白。
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Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events.

本文引用的文献

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Inference of functional regions in proteins by quantification of evolutionary constraints.通过进化限制的量化推断蛋白质中的功能区域
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Early vertebrate chromosome duplications and the evolution of the neuropeptide Y receptor gene regions.早期脊椎动物染色体复制与神经肽Y受体基因区域的进化
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MicroRNAs and the advent of vertebrate morphological complexity.微小RNA与脊椎动物形态复杂性的出现
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Comparative genomics using Fugu reveals insights into regulatory subfunctionalization.使用河豚进行比较基因组学研究揭示了调控亚功能化的见解。
Genome Biol. 2007;8(4):R53. doi: 10.1186/gb-2007-8-4-r53.
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The gain and loss of genes during 600 million years of vertebrate evolution.6亿年脊椎动物进化过程中的基因得失。
Genome Biol. 2006;7(5):R43. doi: 10.1186/gb-2006-7-5-r43. Epub 2006 May 24.
基于叶绿体DNA多态性推断的烟草大豆复合体中多倍体的多个起源
Proc Natl Acad Sci U S A. 1990 Jan;87(2):714-7. doi: 10.1073/pnas.87.2.714.
4
Is tetralogy true? Lack of support for the "one-to-four rule".四联症是真的吗?缺乏对“一比四规则”的支持。
Mol Biol Evol. 2001 Jan;18(1):89-93. doi: 10.1093/oxfordjournals.molbev.a003723.
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Functional equivalence of the transcription factors Pax2 and Pax5 in mouse development.转录因子Pax2和Pax5在小鼠发育中的功能等效性。
Development. 2000 Sep;127(17):3703-13. doi: 10.1242/dev.127.17.3703.
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Evidence in favour of ancient octaploidy in the vertebrate genome.支持脊椎动物基因组中存在古代八倍体的证据。
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Vertebrate innovations.脊椎动物的创新。
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Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions.脊椎动物中的基因和基因组复制:一到四(鱼类为一到八)规则与新基因功能的进化
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Xenopus Pax-2/5/8 orthologues: novel insights into Pax gene evolution and identification of Pax-8 as the earliest marker for otic and pronephric cell lineages.非洲爪蟾Pax-2/5/8直系同源基因:对Pax基因进化的新见解以及Pax-8作为耳和原肾细胞谱系最早标志物的鉴定
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