Yamakura Fumiyuki, Sugio Shigetoshi, Hiraoka B Yukihiro, Ohmori Daijiro, Yokota Takehiro
Department of Chemistry, Juntendo University School of Medicine, Inba 270-1695, Japan.
Biochemistry. 2003 Sep 16;42(36):10790-9. doi: 10.1021/bi0349625.
Glycine 155, which is located approximately 10 A from the active metal sites, is mostly conserved in aligned amino acid sequences of manganese-specific superoxide dismutases (Mn-SODs) and cambialistic SOD (showing the same activity with Fe and Mn) from Porphyromonas gingivalis, but is substituted for threonine in most Fe-SODs. Since Thr155 is located between Trp123 and Trp125, and Trp123 is one member of the metal-surrounding aromatic amino acids, there is a possibility that the conversion of this amino acid may cause a conversion of the metal-specific activity of cambialistic P. gingivalis SOD. To clarify this possibility, we have prepared a mutant of the P. gingivalis SOD with conversion of Gly155 to Thr. The ratios of the specific activities of Fe- to Mn-reconstituted enzyme, which are measured by the xanthine oxidase/cytochrome c method, increased from 0.6 in the wild-type to 11.2 in the mutant SODs, indicating the conversion of the metal-specific activity of the enzyme from a cambialistic type to an Fe-specific type. The visible absorption spectra of the Fe- and Mn-reconstituted mutant SODs closely resembled those of Fe-specific SOD. Furthermore, the EPR spectra of the Fe- and Mn-reconstituted mutant SODs also closely resembled those of Fe-specific SOD. Three-dimensional structures of the Fe-reconstituted wild-type SOD and Mn-reconstituted mutant SOD have been determined at 1.6 A resolution. Both structures have identical conformations, orientations of residues involved in metal binding, and hydrogen bond networks, while the side chain of Trp123 is moved further toward the metal-binding site than in wild-type SOD. A possible contribution of the structural differences to the conversion of the metal-specific activity through rearrangement of the hydrogen bond network among Trp123, Gln70, Tyr35, and the metal-coordinated solvent is discussed.
甘氨酸155位于距活性金属位点约10埃处,在牙龈卟啉单胞菌的锰特异性超氧化物歧化酶(Mn-SOD)和兼性SOD(对铁和锰表现出相同活性)的比对氨基酸序列中大多保守,但在大多数铁超氧化物歧化酶中被苏氨酸取代。由于苏氨酸155位于色氨酸123和色氨酸125之间,且色氨酸123是围绕金属的芳香族氨基酸之一,因此该氨基酸的转变有可能导致兼性牙龈卟啉单胞菌超氧化物歧化酶的金属特异性活性发生转变。为了阐明这种可能性,我们制备了将甘氨酸155转变为苏氨酸的牙龈卟啉单胞菌超氧化物歧化酶突变体。通过黄嘌呤氧化酶/细胞色素c法测定的铁重构酶与锰重构酶的比活性,从野生型的0.6增加到突变体超氧化物歧化酶的11.2,表明该酶的金属特异性活性从兼性类型转变为铁特异性类型。铁重构和锰重构的突变体超氧化物歧化酶的可见吸收光谱与铁特异性超氧化物歧化酶的光谱非常相似。此外,铁重构和锰重构的突变体超氧化物歧化酶的电子顺磁共振光谱也与铁特异性超氧化物歧化酶的光谱非常相似。已在1.6埃分辨率下测定了铁重构的野生型超氧化物歧化酶和锰重构的突变体超氧化物歧化酶的三维结构。两种结构具有相同的构象、参与金属结合的残基取向和氢键网络,而色氨酸123的侧链比野生型超氧化物歧化酶中更靠近金属结合位点。讨论了结构差异通过色氨酸123、谷氨酰胺70、酪氨酸35和金属配位溶剂之间氢键网络的重排对金属特异性活性转变的可能贡献。