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高相位功率镧系元素衍生物:利用镱和镥进行同步辐射优化反常衍射实验

High-phasing-power lanthanide derivatives: taking advantage of ytterbium and lutetium for optimized anomalous diffraction experiments using synchrotron radiation.

作者信息

Girard E, Anelli P L, Vicat J, Kahn R

机构信息

Laboratoire de Cristallographie Macromoléculaire, Institut de Biologie Structurale J. P. Ebel CEA CNRS UJF, 41 Rue Jules Horowitz, 38027 Grenoble CEDEX 01, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1877-80. doi: 10.1107/s0907444903016871. Epub 2003 Sep 19.

DOI:10.1107/s0907444903016871
PMID:14501144
Abstract

Ytterbium and lutetium are well suited for optimized anomalous diffraction experiments using synchrotron radiation. Therefore, two lanthanide complexes Yb-HPDO3A and Lu-HPDO3A have been produced that are similar to the Gd-HPDO3A complex already known to give good derivative crystals. Derivative crystals of hen egg-white lysozyme were obtained by co-crystallization using 100 mM solutions of each lanthanide complex. De novo phasing has been carried out using single-wavelength anomalous diffraction on data sets collected on each derivative crystal at the L(III) absorption edge of the corresponding lanthanide (ff" = 28 e(-)). A third data set was collected on a Lu-HPDO3A derivative crystal at the Se K absorption edge with f"(Lu) = 10 e(-). The structures were refined and compared with the known structure of the Gd-HPDO3A lysozyme derivative. The quality of the experimental electron-density maps allows easy model building. With L(III) absorption edges at shorter wavelengths than the gadolinium absorption edge, lutetium and ytterbium, when chelated by a ligand such as HPDO3A, form lanthanide complexes that are especially interesting for synchrotron-radiation experiments in structural biology.

摘要

镱和镥非常适合使用同步辐射进行优化的反常衍射实验。因此,已制备出两种镧系配合物Yb-HPDO3A和Lu-HPDO3A,它们类似于已知能产生良好衍生晶体的Gd-HPDO3A配合物。通过使用每种镧系配合物的100 mM溶液进行共结晶,获得了鸡蛋清溶菌酶的衍生晶体。利用在相应镧系元素的L(III)吸收边(f" = 28 e(-))对每个衍生晶体收集的数据集进行单波长反常衍射,进行了从头相位测定。在Se K吸收边对一个Lu-HPDO3A衍生晶体收集了第三个数据集,f"(Lu) = 10 e(-)。对结构进行了精修,并与Gd-HPDO3A溶菌酶衍生物的已知结构进行了比较。实验电子密度图的质量便于轻松构建模型。由于镥和镱的L(III)吸收边波长比钆吸收边短,当被诸如HPDO3A这样的配体螯合时,它们形成的镧系配合物对于结构生物学中的同步辐射实验特别有意义。

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