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钆-1,4,7,10-四氮杂环十二烷-1,4,7,10-四乙酸,一种用于单波长反常散射法和多波长反常散射法实验以获得高相移能力重原子衍生物的配合物:来自四方晶系鸡蛋清溶菌酶的实验结果

Gd-HPDO3A, a complex to obtain high-phasing-power heavy-atom derivatives for SAD and MAD experiments: results with tetragonal hen egg-white lysozyme.

作者信息

Girard Eric, Chantalat Laurent, Vicat Jean, Kahn Richard

机构信息

Laboratoire de Cristallographie Macromoléculaire, Institut de Biologie Structurale J.-P. Ebel CEA-CNRS-UJF, 41 Rue Jules Horowitz, 38027 Grenoble CEDEX 01, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):1-9. doi: 10.1107/s0907444901016444. Epub 2001 Dec 21.

Abstract

A neutral gadolinium complex, Gd-HPDO3A, is shown to be a good candidate to use to obtain heavy-atom derivatives and solve macromolecular structures using anomalous dispersion. Tetragonal crystals of a gadolinium derivative of hen egg-white lysozyme were obtained by co-crystallization using different concentrations of the complex. Diffraction data from three derivative crystals (100, 50 and 10 mM) were collected to a resolution of 1.7 A using Cu Kalpha radiation from a rotating anode. Two strong binding sites of the gadolinium complex to the protein were located from the gadolinium anomalous signal in both the 100 and 50 mM derivatives. A single site is occupied in the 10 mM derivative. Phasing using the anomalous signal at a single wavelength (SAD method) leads to an electron-density map of high quality. The structure of the 100 mM derivative has been refined. Two molecules of the gadolinium complex are close together. Both molecules are located close to tryptophan residues. Four chloride ions were found. The exceptional quality of the SAD electron-density map, only enhanced by solvent flattening, suggests that single-wavelength anomalous scattering with the Gd-HPDO3A complex may be sufficient to solve protein structures of high molecular weight by synchrotron-radiation experiments, if not by laboratory experiments.

摘要

一种中性钆配合物Gd-HPDO3A被证明是用于获得重原子衍生物并利用反常色散解析大分子结构的良好候选物。通过使用不同浓度的该配合物进行共结晶,获得了鸡蛋清溶菌酶钆衍生物的四方晶体。使用旋转阳极的铜Kα辐射,收集了来自三个衍生物晶体(100、50和10 mM)的衍射数据,分辨率达到1.7 Å。在100 mM和50 mM衍生物中,从钆反常信号确定了钆配合物与蛋白质的两个强结合位点。在10 mM衍生物中只有一个位点被占据。使用单波长反常信号进行相位确定(SAD方法)得到了高质量的电子密度图。对100 mM衍生物的结构进行了精修。两个钆配合物分子靠得很近。两个分子都靠近色氨酸残基。发现了四个氯离子。仅通过溶剂扁平化得到增强的SAD电子密度图的卓越质量表明,如果不是通过实验室实验,那么利用Gd-HPDO3A配合物进行单波长反常散射可能足以通过同步辐射实验解析高分子量蛋白质的结构。

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