• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

河豚Otx2顺式调控因子的表征揭示了脊椎动物头部特化的进化保守遗传机制。

Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification.

作者信息

Kimura-Yoshida Chiharu, Kitajima Kuniko, Oda-Ishii Izumi, Tian E, Suzuki Misao, Yamamoto Masayuki, Suzuki Tohru, Kobayashi Makoto, Aizawa Shinichi, Matsuo Isao

机构信息

Head Organizer Project, Vertebrate Body Plan Group, RIKEN Center for Developmental Biology, 2-2-3 Minatojima Minami Cho, Chuou-Ku, Kobe, Hyougo 650-0047, Japan.

出版信息

Development. 2004 Jan;131(1):57-71. doi: 10.1242/dev.00877. Epub 2003 Nov 26.

DOI:10.1242/dev.00877
PMID:14645121
Abstract

The Otx2 gene, containing a highly conserved paired-type homeobox, plays a pivotal role in the development of the rostral head throughout vertebrates. Precise regulation of the temporal and spatial expression of Otx2 is likely to be crucial for proper head specification. However, regulatory mechanisms of Otx2 expression remain largely unknown. In this study, the Otx2 genome of the puffer fish Fugu rubripes, which has been proposed as a model vertebrate owing to its highly compact genome, was cloned. Consistently, Fugu Otx2 possesses introns threefold smaller in size than those of the mouse Otx2 gene. Otx2 mRNA was transcribed after MBT, and expressed in the rostral head region throughout the segmentation and pharyngula periods of wild-type Fugu embryos. To elucidate regulatory mechanisms of Otx2 expression, the expression of Otx2-lacZ reporter genes nearly covering the Fugu Otx2 locus, from -30.5 to +38.5 kb, was analyzed, by generating transgenic mice. Subsequently, seven independent cis-regulators were identified over an expanse of 60 kb; these regulators are involved in the mediation of spatiotemporally distinct subdomains of Otx2 expression. Additionally, these expression domains appear to coincide with local signaling centers and developing sense organs. Interestingly, most domains do not overlap with one another, which implies that cis-regulators for redundant expression may be abolished exclusively in the pufferfish so as to reduce its genome size. Moreover, these cis-regions were also able to direct expression in zebrafish embryos equivalent to that observed in transgenic mice. Further comparative sequence analysis of mouse and pufferfish intergenic regions revealed eight highly conserved elements within these cis-regulators. Therefore, we propose that, in vertebrate evolution, the Otx2 promoter acquires multiple, spatiotemporally specific cis-regulators in order to precisely control highly coordinated processes in head development.

摘要

Otx2基因含有一个高度保守的配对型同源异型框,在整个脊椎动物的头部前端发育中起着关键作用。Otx2在时间和空间上表达的精确调控对于正确的头部特化可能至关重要。然而,Otx2表达的调控机制在很大程度上仍然未知。在本研究中,河豚红鳍东方鲀的Otx2基因组被克隆,因其基因组高度紧凑,河豚已被提议作为模式脊椎动物。一致的是,河豚Otx2的内含子大小比小鼠Otx2基因的内含子小三倍。Otx2 mRNA在中囊胚转换后转录,并在野生型河豚胚胎的整个分节期和咽胚期在头部前端区域表达。为了阐明Otx2表达的调控机制,通过生成转基因小鼠,分析了几乎覆盖河豚Otx2基因座(从-30.5 kb到+38.5 kb)的Otx2-lacZ报告基因的表达。随后,在60 kb的范围内鉴定出七个独立的顺式调节因子;这些调节因子参与介导Otx2表达在时空上不同的亚结构域。此外,这些表达结构域似乎与局部信号中心和发育中的感觉器官一致。有趣的是,大多数结构域彼此不重叠,这意味着冗余表达的顺式调节因子可能仅在河豚中被消除,以减小其基因组大小。此外,这些顺式区域也能够在斑马鱼胚胎中指导表达,与在转基因小鼠中观察到的表达相当。对小鼠和河豚基因间区域的进一步比较序列分析揭示了这些顺式调节因子内的八个高度保守元件。因此,我们提出,在脊椎动物进化过程中,Otx2启动子获得了多个时空特异性的顺式调节因子,以便精确控制头部发育中高度协调的过程。

相似文献

1
Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification.河豚Otx2顺式调控因子的表征揭示了脊椎动物头部特化的进化保守遗传机制。
Development. 2004 Jan;131(1):57-71. doi: 10.1242/dev.00877. Epub 2003 Nov 26.
2
Otx genes in evolution: are they involved in instructing the vertebrate brain morphology?进化中的Otx基因:它们是否参与指导脊椎动物大脑形态的形成?
J Anat. 2001 Jul-Aug;199(Pt 1-2):53-62. doi: 10.1046/j.1469-7580.2001.19910053.x.
3
Cis-acting elements conserved between mouse and pufferfish Otx2 genes govern the expression in mesencephalic neural crest cells.
Development. 1997 Oct;124(20):3929-41. doi: 10.1242/dev.124.20.3929.
4
Otx genes in the development and evolution of the vertebrate brain.Otx基因在脊椎动物脑发育与进化中的作用
Int J Dev Neurosci. 2001 Jul;19(4):353-63. doi: 10.1016/s0736-5748(01)00003-x.
5
Involvement of Pax6 and Otx2 in the forebrain-specific regulation of the vertebrate homeobox gene ANF/Hesx1.Pax6和Otx2参与脊椎动物同源盒基因ANF/Hesx1的前脑特异性调控。
Dev Biol. 2004 May 15;269(2):567-79. doi: 10.1016/j.ydbio.2004.01.044.
6
Evolutionary alteration in anterior patterning: otx2 expression in the direct developing frog Eleutherodactylus coqui.前部模式的进化改变:直接发育的青蛙寇奎姬蛙中otx2基因的表达
Dev Biol. 1999 Jan 15;205(2):233-9. doi: 10.1006/dbio.1998.9078.
7
The TINS Lecture. Understanding the roles of Otx1 and Otx2 in the control of brain morphogenesis.廷斯讲座。了解Otx1和Otx2在控制脑形态发生中的作用。
Trends Neurosci. 1999 Mar;22(3):116-22. doi: 10.1016/s0166-2236(98)01387-3.
8
Evolutionary constraint on Otx2 neuroectoderm enhancers-deep conservation from skate to mouse and unique divergence in teleost.Otx2神经外胚层增强子的进化限制——从鳐鱼到小鼠的深度保守以及硬骨鱼中的独特分化。
Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19350-5. doi: 10.1073/pnas.0604686103. Epub 2006 Dec 11.
9
Functional equivalency between Otx2 and Otx1 in development of the rostral head.Otx2与Otx1在头前部发育中的功能等效性。
Development. 1999 Feb;126(4):743-57. doi: 10.1242/dev.126.4.743.
10
Visceral endoderm-restricted translation of Otx1 mediates recovery of Otx2 requirements for specification of anterior neural plate and normal gastrulation.内胚层特异性的Otx1翻译介导了对Otx2的需求恢复,以实现前神经板的特化和正常原肠胚形成。
Development. 1998 Dec;125(24):5091-104. doi: 10.1242/dev.125.24.5091.

引用本文的文献

1
Disruption of Distal Regulatory Elements as a Possible Mechanism Implicated in Corneal Endothelial Dystrophy.远端调控元件的破坏作为角膜内皮营养不良的一种可能机制。
Hum Mutat. 2024 Jan 4;2024:4450082. doi: 10.1155/2024/4450082. eCollection 2024.
2
What Goes Wrong during Early Development of Artificially Reproduced European Eel ? Clues from the Larval Transcriptome and Gene Expression Patterns.人工繁殖欧洲鳗鲡早期发育过程中出现了什么问题?来自幼体转录组和基因表达模式的线索。
Animals (Basel). 2021 Jun 8;11(6):1710. doi: 10.3390/ani11061710.
3
Super-enhancers in transcriptional regulation and genome organization.
超级增强子在转录调控和基因组组织中的作用。
Nucleic Acids Res. 2019 Dec 16;47(22):11481-11496. doi: 10.1093/nar/gkz1038.
4
A novel measure of non-coding genome conservation identifies genomic regulatory blocks within primates.一种新的非编码基因组保守性度量方法在灵长类动物中鉴定出了基因组调控模块。
Bioinformatics. 2019 Jul 15;35(14):2354-2361. doi: 10.1093/bioinformatics/bty1014.
5
Regulatory variants of FOXG1 in the context of its topological domain organisation.FOXG1 调控变体与其拓扑结构域组织的关系。
Eur J Hum Genet. 2018 Feb;26(2):186-196. doi: 10.1038/s41431-017-0011-4. Epub 2017 Dec 30.
6
Enrichment of megabase-sized DNA molecules for single-molecule optical mapping and next-generation sequencing.用于单分子光学作图和新一代测序的兆碱基大小 DNA 分子的富集。
Sci Rep. 2017 Dec 20;7(1):17893. doi: 10.1038/s41598-017-18091-6.
7
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation.拓扑相关结构域是古老的特征,与后生动物中极端非编码保守序列的簇相吻合。
Nat Commun. 2017 Sep 5;8(1):441. doi: 10.1038/s41467-017-00524-5.
8
Identification and functional characterization of novel transcriptional enhancers involved in regulating human GLI3 expression during early development.早期发育过程中参与调控人类GLI3表达的新型转录增强子的鉴定与功能表征
Dev Growth Differ. 2015 Oct;57(8):570-80. doi: 10.1111/dgd.12239. Epub 2015 Oct 14.
9
Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence.尽管非编码序列存在广泛差异,但线虫中调控信息在门水平上的保守性
PLoS Genet. 2015 May 28;11(5):e1005268. doi: 10.1371/journal.pgen.1005268. eCollection 2015 May.
10
Identification and computational analysis of gene regulatory elements.基因调控元件的鉴定与计算分析
Cold Spring Harb Protoc. 2015 Jan 5;2015(1):pdb.top083642. doi: 10.1101/pdb.top083642.