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相互作用蛋白质数据库:2004年更新版。

The Database of Interacting Proteins: 2004 update.

作者信息

Salwinski Lukasz, Miller Christopher S, Smith Adam J, Pettit Frank K, Bowie James U, Eisenberg David

机构信息

Howard Hughes Medical Institute, UCLA-DOE Institute for Genomics and Proteomics, 90095-1570, USA.

出版信息

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D449-51. doi: 10.1093/nar/gkh086.

Abstract

The Database of Interacting Proteins (http://dip.doe-mbi.ucla.edu) aims to integrate the diverse body of experimental evidence on protein-protein interactions into a single, easily accessible online database. Because the reliability of experimental evidence varies widely, methods of quality assessment have been developed and utilized to identify the most reliable subset of the interactions. This CORE set can be used as a reference when evaluating the reliability of high-throughput protein-protein interaction data sets, for development of prediction methods, as well as in the studies of the properties of protein interaction networks.

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本文引用的文献

2
Computational methods of analysis of protein-protein interactions.
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3
BIND: the Biomolecular Interaction Network Database.
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4
Inferring domain-domain interactions from protein-protein interactions.
Genome Res. 2002 Oct;12(10):1540-8. doi: 10.1101/gr.153002.
5
Protein interactions: two methods for assessment of the reliability of high throughput observations.
Mol Cell Proteomics. 2002 May;1(5):349-56. doi: 10.1074/mcp.m100037-mcp200.
6
7
Comparative assessment of large-scale data sets of protein-protein interactions.
Nature. 2002 May 23;417(6887):399-403. doi: 10.1038/nature750. Epub 2002 May 8.
8
MINT: a Molecular INTeraction database.
FEBS Lett. 2002 Feb 20;513(1):135-40. doi: 10.1016/s0014-5793(01)03293-8.
10

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