Heyrman Jeroen, Vanparys Bram, Logan Niall A, Balcaen An, Rodríguez-Díaz Marina, Felske Andreas, De Vos Paul
Ghent University, Department BFM (WE10V), Laboratory of Microbiology, K.-L. Ledeganckstraat 35, B-9000 Gent, Belgium.
School of Biological and Biomedical Sciences, Glasgow Caledonian University, Cowcaddens Road, Glasgow G4 0BA, UK.
Int J Syst Evol Microbiol. 2004 Jan;54(Pt 1):47-57. doi: 10.1099/ijs.0.02723-0.
A group of 42 isolates were isolated from the soil of several disused hay fields, in the Drentse A agricultural research area (The Netherlands), that were taken out of production at different times. The group represents hitherto-uncultured Bacillus lineages that have previously been found, by a non-cultural method, to be predominant in soil. The strains were subjected to a polyphasic taxonomic study, including (GTG)5-PCR, 16S rDNA sequence analysis, DNA-DNA hybridizations, DNA base-ratio determination, fatty acid analysis and morphological and biochemical characterization. By comparing the groupings obtained by (GTG)5-PCR and 16S rDNA sequence analysis, six clusters of similar strains could be recognized. A DNA-DNA relatedness study showed that these clusters represented five novel genospecies. Further analysis supported the proposal of five novel species in the genus Bacillus, namely Bacillus novalis sp. nov. (type strain IDA3307T=R-15439T=LMG 21837T=DSM 15603T), Bacillus vireti sp. nov. (type strain IDA3632T=R-15447T=LMG 21834T=DSM 15602T), Bacillus soli sp. nov. (type strain IDA0086T=R-16300T=LMG 21838T=DSM 15604T), Bacillus bataviensis sp. nov. (type strain IDA1115T=R-16315T=LMG 21833T=DSM 15601T) and Bacillus drentensis sp. nov. (type strain IDA1967T=R-16337T=LMG 21831T=DSM 15600T).
从荷兰德伦特省A农业研究区几个废弃干草场的土壤中分离出一组42个菌株,这些干草场在不同时间停止生产。该菌株组代表了此前尚未培养的芽孢杆菌谱系,此前通过非培养方法发现这些谱系在土壤中占主导地位。对这些菌株进行了多相分类研究,包括(GTG)5-PCR、16S rDNA序列分析、DNA-DNA杂交、DNA碱基比例测定、脂肪酸分析以及形态和生化特征鉴定。通过比较(GTG)5-PCR和16S rDNA序列分析得到的分组,可以识别出六个相似菌株簇。DNA-DNA相关性研究表明,这些簇代表了五个新的基因种。进一步分析支持了芽孢杆菌属五个新物种的提议,即诺瓦利斯芽孢杆菌(Bacillus novalis sp. nov.)(模式菌株IDA3307T = R-15439T = LMG 21837T = DSM 15603T)、维瑞蒂芽孢杆菌(Bacillus vireti sp. nov.)(模式菌株IDA3632T = R-15447T = LMG 21834T = DSM 15602T)、土壤芽孢杆菌(Bacillus soli sp. nov.)(模式菌株IDA0086T = R-16300T = LMG 21838T = DSM 15604T)、巴塔维亚芽孢杆菌(Bacillus bataviensis sp. nov.)(模式菌株IDA1115T = R-16315T = LMG 21833T = DSM 15601T)和德伦特芽孢杆菌(Bacillus drentensis sp. nov.)(模式菌株IDA1967T = R-16337T = LMG 21831T = DSM 15600T)。