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新种沙芽孢杆菌、新种田芽孢杆菌和新种土芽孢杆菌,从土壤中分离得到。

Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil.

作者信息

Heyrman Jeroen, Rodríguez-Díaz Marina, Devos Joke, Felske Andreas, Logan Niall A, De Vos Paul

机构信息

Vakgroep BFM WE10V, Laboratorium voor Microbiologie, Universiteit Gent, K. L. Ledeganckstraat 35, B-9000 Gent, Belgium.

School of Biological and Biomedical Sciences, Glasgow Caledonian University, Cowcaddens Road, Glasgow G4 0BA, UK.

出版信息

Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):111-117. doi: 10.1099/ijs.0.63240-0.

Abstract

A group of nine Gram-positive endospore-forming bacteria was isolated from soil of the Drentse A agricultural research area in The Netherlands. Using (GTG)5-PCR genomic fingerprinting and fatty acid analysis, the nine isolates were divided into three consistent groups. On the basis of 16S rRNA gene sequence similarity of representative strains, the nine isolates were shown to belong to the genus Bacillus. The first group of four isolates was most closely related to Bacillus carboniphilus (95.5 %) and Bacillus sporothermodurans (95.5 %). The second and third groups of three and two isolates, respectively, showed highest sequence similarity to Bacillus neidei (97.0 and 97.1 %, respectively) and Bacillus pycnus (both 96.7 %). A DNA-DNA relatedness study confirmed the consistency of the three groups delineated by (GTG)5-PCR and fatty acid analysis. A small number of phenotypic characters allowed differentiation of the three groups of isolates. The three groups therefore represent novel species, for which the names Bacillus humi, Bacillus arenosi and Bacillus arvi are proposed, with LMG 22167T (=DSM 16318T), LMG 22166T (=DSM 16319T) and LMG 22165T (=DSM 16317T) as the respective type strains.

摘要

从荷兰德伦特省A农业研究区的土壤中分离出一组9株革兰氏阳性产芽孢细菌。通过(GTG)5-PCR基因组指纹图谱和脂肪酸分析,这9株分离菌被分为三个一致的组。根据代表性菌株的16S rRNA基因序列相似性,这9株分离菌被证明属于芽孢杆菌属。第一组的4株分离菌与嗜碳芽孢杆菌(95.5%)和嗜热栖芽孢杆菌(95.5%)关系最为密切。第二组和第三组分别有3株和2株分离菌,与内氏芽孢杆菌(分别为97.0%和97.1%)和致密芽孢杆菌(均为96.7%)的序列相似性最高。DNA-DNA相关性研究证实了由(GTG)5-PCR和脂肪酸分析划分的三个组的一致性。少数表型特征可区分这三组分离菌。因此,这三组代表了新的物种,分别命名为土壤芽孢杆菌、沙质芽孢杆菌和农田芽孢杆菌,其模式菌株分别为LMG 22167T(=DSM 16318T)、LMG 22166T(=DSM 16319T)和LMG 22165T(=DSM 16317T)。

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