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Water in protein structure prediction.
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Electrostatics, structure prediction, and the energy landscapes for protein folding and binding.
Protein Sci. 2016 Jan;25(1):255-69. doi: 10.1002/pro.2751. Epub 2015 Aug 8.
3
Water and proteins: a love-hate relationship.
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Entropy reduction effect imposed by hydrogen bond formation on protein folding cooperativity: evidence from a hydrophobic minimalist model.
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 1):051903. doi: 10.1103/PhysRevE.72.051903. Epub 2005 Nov 1.
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Role of water mediated interactions in protein-protein recognition landscapes.
J Am Chem Soc. 2003 Jul 30;125(30):9170-8. doi: 10.1021/ja034729u.
6
Water promotes the sealing of nanoscale packing defects in folding proteins.
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Why Computed Protein Folding Landscapes Are Sensitive to the Water Model.
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Effective potentials for folding proteins.
Phys Rev Lett. 2006 Feb 24;96(7):078103. doi: 10.1103/PhysRevLett.96.078103. Epub 2006 Feb 22.
9
Folding mechanism of all-beta globular proteins.
Prep Biochem Biotechnol. 2004 Feb;34(1):13-23. doi: 10.1081/PB-120027110.
10
Hydrophobic association of alpha-helices, steric dewetting, and enthalpic barriers to protein folding.
Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6206-10. doi: 10.1073/pnas.0605859104. Epub 2007 Apr 2.

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Importance of Inter-residue Contacts for Understanding Protein Folding and Unfolding Rates, Remote Homology, and Drug Design.
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Phase separation of multicomponent peptide mixtures into dehydrated clusters with hydrophilic cores.
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Dynamics of water-mediated interaction effects on the stability and transmission of Omicron.
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Top-Down Machine Learning of Coarse-Grained Protein Force Fields.
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An associative memory Hamiltonian model for DNA and nucleosomes.
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Heterogeneous and Allosteric Role of Surface Hydration for Protein-Ligand Binding.
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The Solvation of the CheY Phosphorylation Site Mapped by XFMS.
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Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire.
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Structural dynamics shape the fitness window of alanine:glyoxylate aminotransferase.
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本文引用的文献

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Toward protein tertiary structure recognition by means of associative memory hamiltonians.
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Role of water mediated interactions in protein-protein recognition landscapes.
J Am Chem Soc. 2003 Jul 30;125(30):9170-8. doi: 10.1021/ja034729u.
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Some factors in the interpretation of protein denaturation.
Adv Protein Chem. 1959;14:1-63. doi: 10.1016/s0065-3233(08)60608-7.
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Minimalist models for protein folding and design.
Curr Opin Struct Biol. 2003 Apr;13(2):160-7. doi: 10.1016/s0959-440x(03)00030-7.
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The physics and bioinformatics of binding and folding-an energy landscape perspective.
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Of men and machines.
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The structure of an FF domain from human HYPA/FBP11.
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Ab initio protein structure prediction.
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