• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

从水稻中鉴定出20种微小RNA。

Identification of 20 microRNAs from Oryza sativa.

作者信息

Wang Jia-Fu, Zhou Hui, Chen Yue-Qin, Luo Qing-Jun, Qu Liang-Hu

机构信息

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou 510275, People's Republic of China.

出版信息

Nucleic Acids Res. 2004 Mar 12;32(5):1688-95. doi: 10.1093/nar/gkh332. Print 2004.

DOI:10.1093/nar/gkh332
PMID:15020705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC390330/
Abstract

MicroRNAs (miRNAs) are present in both plant and animal kingdoms and represents a growing family of non-coding RNAs. These tiny RNAs act as small guides and direct negative regulations usually in the process of development through sequence complementarity to target mRNAs. Although a large number of miRNAs have been identified from various animals, so far plant miRNA studies have focused mainly on Arabidopsis. Here we describe the identification of 20 miRNAs from a rice cDNA library. All the miRNAs were presumably processed from precursors with stem-loop structures and were positively detected in rice cells from at least one tissue, some of which showed tissue-specific expression. Twenty-three unique rice genes were identified to be feasible targets for seven rice miRNAs, including four members of Scarecrow-like transcription factor, the targets of miR-39 that had been characterized in Arabidopsis. Lacking long complementarity, the regulatory targets of 13 miRNAs remain to be further investigated. A possible mechanism of translational repressor for plant miRNAs that lack perfect complementarity to target mRNAs is discussed.

摘要

微小RNA(miRNA)存在于植物和动物界,是一个不断壮大的非编码RNA家族。这些微小RNA充当小向导,通常在发育过程中通过与靶mRNA的序列互补来进行负调控。尽管已从各种动物中鉴定出大量miRNA,但到目前为止,植物miRNA研究主要集中在拟南芥上。在此,我们描述了从水稻cDNA文库中鉴定出20种miRNA。所有这些miRNA可能都是从前体茎环结构加工而来,并在至少一种组织的水稻细胞中得到阳性检测,其中一些表现出组织特异性表达。鉴定出23个独特的水稻基因是7种水稻miRNA的可行靶标,包括稻草人样转录因子的四个成员,它们是在拟南芥中已被鉴定的miR-39的靶标。由于缺乏长互补性,13种miRNA的调控靶标仍有待进一步研究。本文还讨论了植物miRNA对靶mRNA缺乏完美互补性时的一种可能的翻译抑制机制。

相似文献

1
Identification of 20 microRNAs from Oryza sativa.从水稻中鉴定出20种微小RNA。
Nucleic Acids Res. 2004 Mar 12;32(5):1688-95. doi: 10.1093/nar/gkh332. Print 2004.
2
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.植物微小RNA及其靶标的计算鉴定,包括一种胁迫诱导的微小RNA。
Mol Cell. 2004 Jun 18;14(6):787-99. doi: 10.1016/j.molcel.2004.05.027.
3
Cloning and characterization of microRNAs from rice.水稻中微小RNA的克隆与特性分析
Plant Cell. 2005 May;17(5):1397-411. doi: 10.1105/tpc.105.031682. Epub 2005 Apr 1.
4
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.拟南芥微小RNA及其mRNA靶标的预测与鉴定。
Genome Biol. 2004;5(9):R65. doi: 10.1186/gb-2004-5-9-r65. Epub 2004 Aug 31.
5
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.在拟南芥和水稻中检测91种潜在保守的植物微小RNA可鉴定出重要的靶基因。
Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6. doi: 10.1073/pnas.0404025101. Epub 2004 Jul 22.
6
Genome-wide characterization of rice black streaked dwarf virus-responsive microRNAs in rice leaves and roots by small RNA and degradome sequencing.通过小RNA和降解组测序对水稻叶片和根中水稻黑条矮缩病毒响应的微小RNA进行全基因组特征分析。
Plant Cell Physiol. 2015 Apr;56(4):688-99. doi: 10.1093/pcp/pcu213. Epub 2014 Dec 21.
7
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains.发育中的水稻籽粒中多种类型的微小RNA和类微小RNA小RNA
Genome Res. 2008 Sep;18(9):1456-65. doi: 10.1101/gr.075572.107. Epub 2008 Aug 7.
8
A transcriptome-wide study on the microRNA- and the Argonaute 1-enriched small RNA-mediated regulatory networks involved in plant leaf senescence.一项关于参与植物叶片衰老的富含微小RNA和AGO1的小RNA介导的调控网络的全转录组研究。
Plant Biol (Stuttg). 2016 Mar;18(2):197-205. doi: 10.1111/plb.12373. Epub 2015 Aug 4.
9
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa.拟南芥和水稻中微小RNA基因新家族成员的计算鉴定
Acta Biochim Biophys Sin (Shanghai). 2005 Feb;37(2):75-87.
10
Identification of novel stress-regulated microRNAs from Oryza sativa L.从水稻中鉴定新型应激调节 microRNAs
Genomics. 2010 Jan;95(1):47-55. doi: 10.1016/j.ygeno.2009.08.017. Epub 2009 Sep 29.

引用本文的文献

1
The Use of Arabidopsis thaliana to Characterize the Production and Action Stages of the Plant MicroRNA Pathway.利用拟南芥表征植物微小RNA途径的产生和作用阶段。
Methods Mol Biol. 2025;2900:1-42. doi: 10.1007/978-1-0716-4398-3_1.
2
TP53I11 Functions Downstream of Multiple MicroRNAs to Increase ER Calcium Levels and Inhibits Cancer Cell Proliferation.TP53I11在多个微小RNA的下游发挥作用,以提高内质网钙水平并抑制癌细胞增殖。
Int J Mol Sci. 2024 Dec 24;26(1):31. doi: 10.3390/ijms26010031.
3
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data.deepBase v3.0:来自数千个深度测序数据的 ncRNAs 的表达图谱和交互式分析。
Nucleic Acids Res. 2021 Jan 8;49(D1):D877-D883. doi: 10.1093/nar/gkaa1039.
4
Novel and Conserved miRNAs Among Brazilian Pine and Other Gymnosperms.巴西松和其他裸子植物中的新型保守微小RNA
Front Genet. 2019 Mar 22;10:222. doi: 10.3389/fgene.2019.00222. eCollection 2019.
5
Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions.在干旱条件下,从携带qDTY4.1-QTL的近等基因系抽穗期水稻花序中鉴定功能重要的微小RNA。
PLoS One. 2017 Oct 18;12(10):e0186382. doi: 10.1371/journal.pone.0186382. eCollection 2017.
6
Identification, Characterization, and Functional Validation of Drought-responsive MicroRNAs in Subtropical Maize Inbreds.亚热带玉米自交系中干旱响应微小RNA的鉴定、表征及功能验证
Front Plant Sci. 2017 Jun 2;8:941. doi: 10.3389/fpls.2017.00941. eCollection 2017.
7
Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection.微小RNA在重要农作物中的功能作用——作为作物改良与保护靶点的潜力
Front Plant Sci. 2017 Mar 22;8:378. doi: 10.3389/fpls.2017.00378. eCollection 2017.
8
PhOBF1, a petunia ocs element binding factor, plays an important role in antiviral RNA silencing.矮牵牛ocs元件结合因子PhOBF1在抗病毒RNA沉默中起重要作用。
J Exp Bot. 2017 Feb 1;68(5):915-930. doi: 10.1093/jxb/erw490.
9
A petunia ethylene-responsive element binding factor, PhERF2, plays an important role in antiviral RNA silencing.矮牵牛乙烯响应元件结合因子PhERF2在抗病毒RNA沉默中起重要作用。
J Exp Bot. 2016 May;67(11):3353-65. doi: 10.1093/jxb/erw155. Epub 2016 Apr 19.
10
A non-radioactive method for small RNA detection by northern blotting.一种通过Northern印迹法检测小RNA的非放射性方法。
Rice (N Y). 2014 Dec;7(1):26. doi: 10.1186/s12284-014-0026-1. Epub 2014 Oct 1.

本文引用的文献

1
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes.一种微小RNA及其类似APETALA2的靶基因对开花时间和花器官特征的调控。
Plant Cell. 2003 Nov;15(11):2730-41. doi: 10.1105/tpc.016238. Epub 2003 Oct 10.
2
Molecular biology: microRNA is here to stay.分子生物学:微小RNA将持续存在。
Nature. 2003 Sep 18;425(6955):244-5. doi: 10.1038/425244a.
3
Control of leaf morphogenesis by microRNAs.微小RNA对叶片形态发生的调控
Nature. 2003 Sep 18;425(6955):257-63. doi: 10.1038/nature01958. Epub 2003 Aug 20.
4
The small RNA profile during Drosophila melanogaster development.黑腹果蝇发育过程中的小RNA图谱。
Dev Cell. 2003 Aug;5(2):337-50. doi: 10.1016/s1534-5807(03)00228-4.
5
MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms.微小RNA和小干扰RNA可通过类似机制抑制信使核糖核酸的表达。
Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9779-84. doi: 10.1073/pnas.1630797100. Epub 2003 Aug 5.
6
Role of microRNAs in plant and animal development.微小RNA在植物和动物发育中的作用。
Science. 2003 Jul 18;301(5631):336-8. doi: 10.1126/science.1085242.
7
Mfold web server for nucleic acid folding and hybridization prediction.用于核酸折叠和杂交预测的Mfold网络服务器。
Nucleic Acids Res. 2003 Jul 1;31(13):3406-15. doi: 10.1093/nar/gkg595.
8
Hes1 is a target of microRNA-23 during retinoic-acid-induced neuronal differentiation of NT2 cells.在视黄酸诱导的NT2细胞神经元分化过程中,Hes1是微小RNA-23的一个靶标。
Nature. 2003 Jun 19;423(6942):838-42. doi: 10.1038/nature01730. Epub 2003 Jun 8.
9
MicroRNAs: at the root of plant development?微小RNA:植物发育的根源?
Plant Physiol. 2003 Jun;132(2):709-17. doi: 10.1104/pp.103.023630.
10
Computational and experimental identification of C. elegans microRNAs.秀丽隐杆线虫微小RNA的计算与实验鉴定
Mol Cell. 2003 May;11(5):1253-63. doi: 10.1016/s1097-2765(03)00153-9.