Badger J
Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, Massachusetts 02254.
Biophys J. 1992 Mar;61(3):816-9. doi: 10.1016/S0006-3495(92)81886-6.
Comparisons of atomic models for chemically identical protein molecules solved in differing crystal environments provide information on flexibility in the protein structure. The structures of five T4 lysozyme proteins in differing crystal environments showed large relative displacements of the two domains with conserved backbone conformations that are connected by a flexible hinge (H. R. Faber and B. W. Matthews. 1990. Nature (Lond.). 348:263-266). In contrast, my comparison of the positions of all the atoms in two crystal forms of insulin shows that the structural changes caused by the differing crystal contacts are contained within nearby amino acids and are not propagated through the core of the insulin molecule. Groups of atoms that are most significantly displaced are not shifted in large rigid units but are repacked into new and distinct conformations. The transmission of displacements through the single domain insulin molecule is, like the movements due to thermal vibrations (D. L. D. Caspar, J. Clarage, D. M. Salunke, M. S. Clarage. 1988. Nature (Lond.). 332:659-662), characterized by short-range interactions between small atomic groups.
对在不同晶体环境中解析出的化学性质相同的蛋白质分子的原子模型进行比较,可提供有关蛋白质结构灵活性的信息。在不同晶体环境中的五种T4溶菌酶蛋白的结构显示,两个结构域有较大的相对位移,其保守的主链构象由一个柔性铰链连接(H. R. 法伯和B. W. 马修斯。1990年。《自然》(伦敦)。348:263 - 266)。相比之下,我对胰岛素两种晶体形式中所有原子位置的比较表明,由不同晶体接触引起的结构变化局限于附近的氨基酸内,不会通过胰岛素分子的核心传播。位移最显著的原子组不是以大的刚性单元移动,而是重新排列成新的、独特的构象。通过单结构域胰岛素分子的位移传递,与热振动引起的运动一样(D. L. D. 卡斯帕、J. 克拉拉奇、D. M. 萨伦克、M. S. 克拉拉奇。1988年。《自然》(伦敦)。332:659 - 662),其特征是小原子组之间的短程相互作用。